View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0275_low_3 (Length: 309)
Name: NF0275_low_3
Description: NF0275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0275_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 22121575 - 22121815
Alignment:
| Q |
40 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121575 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
22121674 |
T |
|
| Q |
140 |
cctgatatatatgattgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatt |
239 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121675 |
cctgatatatatgatcgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatt |
22121774 |
T |
|
| Q |
240 |
aaaaacccagaccaatataattaagaactaaatactggttt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121775 |
aaaaacccagaccaatataattaagaactaaatactggttt |
22121815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 40 - 280
Target Start/End: Complemental strand, 40512898 - 40512658
Alignment:
| Q |
40 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512898 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
40512799 |
T |
|
| Q |
140 |
cctgatatatatgattgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatt |
239 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512798 |
cctgatatatatgatcgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatt |
40512699 |
T |
|
| Q |
240 |
aaaaacccagaccaatataattaagaactaaatactggttt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40512698 |
aaaaacccagaccaatataattaagaactaaatactggttt |
40512658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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