View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0276_high_11 (Length: 311)

Name: NF0276_high_11
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0276_high_11
NF0276_high_11
[»] chr7 (14 HSPs)
chr7 (213-282)||(2329185-2329254)
chr7 (213-282)||(2337084-2337153)
chr7 (98-213)||(1551715-1551830)
chr7 (100-200)||(1595263-1595363)
chr7 (98-210)||(1105165-1105277)
chr7 (98-210)||(1603585-1603697)
chr7 (150-213)||(1087889-1087952)
chr7 (100-203)||(1607281-1607384)
chr7 (49-170)||(2320027-2320145)
chr7 (98-184)||(2328583-2328669)
chr7 (98-211)||(1542312-1542425)
chr7 (98-210)||(2320217-2320329)
chr7 (213-271)||(1105434-1105492)
chr7 (235-271)||(1595552-1595588)
[»] scaffold0491 (3 HSPs)
scaffold0491 (98-184)||(2027-2113)
scaffold0491 (143-210)||(6970-7037)
scaffold0491 (213-271)||(1787-1845)
[»] chr8 (7 HSPs)
chr8 (98-184)||(18740149-18740235)
chr8 (98-184)||(18745113-18745199)
chr8 (143-210)||(18724477-18724544)
chr8 (143-210)||(18750129-18750196)
chr8 (100-156)||(18750543-18750599)
chr8 (213-271)||(18739908-18739966)
chr8 (213-271)||(18744872-18744930)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 2329185 - 2329254
Alignment:
Q  213 aataataatcttactggagtgtttccccaatctctttgtaatgtccattatgtggacatatcctgcaatc 282  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||    
T  2329185 aataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatc 2329254  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 2337084 - 2337153
Alignment:
Q  213 aataataatcttactggagtgtttccccaatctctttgtaatgtccattatgtggacatatcctgcaatc 282  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||    
T  2337084 aataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatc 2337153  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 1551830 - 1551715
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaa 197  Q
    ||||||||||||||| |||||| |  ||| | |||||| |   | ||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||    
T  1551830 aaggttccattcctcttgagttagtgttcttgaaaaatatcactacattaaatctatctcacaatagactcaatggaaacttgcctatttctcttacaaa 1551731  T
Q  198 tctcacccaattagta 213  Q
    ||||||  ||||||||    
T  1551730 tctcacaaaattagta 1551715  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 1595263 - 1595363
Alignment:
Q  100 ggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaatc 199  Q
    ||||||||||||||||| ||||||||| |  |||||||   | ||||| ||||||||||||||||||| ||||||||| ||||||| |  ||||||||||    
T  1595263 ggttccattcctcatgaattgggattcttggaaaatctctatacattagatctatctcacaatagacttaatggaaacctgcctatttttctttcaaatc 1595362  T
Q  200 t 200  Q
    |    
T  1595363 t 1595363  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 1105165 - 1105277
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaa 197  Q
    ||||||||||||||| ||||||||| ||| | || |||||   |  |||| ||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  1105165 aaggttccattcctcttgagttggggttcttgaagaatctcactatattagatctatctcacaatagactcaatggaaactttcctatttttgtttcaaa 1105264  T
Q  198 tctcacccaatta 210  Q
    ||| || ||||||    
T  1105265 tcttacacaatta 1105277  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 1603585 - 1603697
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaa 197  Q
    ||||||||||||||| ||||||||| ||| |  || ||||   | ||||| ||||||||||||||||||| ||||| ||| ||||||| |  ||||||||    
T  1603585 aaggttccattcctcttgagttggggttcttggaatatctctcttcattagatctatctcacaatagacttaatggtaacctgcctatttttctttcaaa 1603684  T
Q  198 tctcacccaatta 210  Q
    ||| || ||||||    
T  1603685 tcttacacaatta 1603697  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 1087889 - 1087952
Alignment:
Q  150 tctatctcacaatagactcaatggaaacttgcctatgtccctttcaaatctcacccaattagta 213  Q
    |||||||||||||||||| || |||||||||||||| || ||| ||||||||||  ||||||||    
T  1087889 tctatctcacaatagacttaacggaaacttgcctatttctcttacaaatctcacaaaattagta 1087952  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 1607281 - 1607384
Alignment:
Q  100 ggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaatc 199  Q
    ||||||||||||||||||||||| ||| | ||||||||   |  |||| |||||||| |||||||| |||||  |||||||||||| | |||| |||| |    
T  1607281 ggttccattcctcatgagttggggttcttgaaaaatctcactaaattagatctatctaacaatagattcaatataaacttgcctatattccttacaaacc 1607380  T
Q  200 tcac 203  Q
    ||||    
T  1607381 tcac 1607384  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 2320027 - 2320145
Alignment:
Q  49 aatcttagacaattaaagtacttaaacatatcctacaaccatcttcaataaggttccattcctcatgagttgggattcattaaaaatctggttgcattat 148  Q
    ||||||||||| || ||| ||||| |||| || |||||| | ||||||   | |||||||||||| |||||||||||||||||||||||   | |||||     
T  2320027 aatcttagacagttgaagaacttagacatctcatacaacaaccttcaa---gtttccattcctcacgagttgggattcattaaaaatctcacttcattag 2320123  T
Q  149 atctatctcacaatagactcaa 170  Q
    || |||| ||||||||| ||||    
T  2320124 atttatcccacaatagaatcaa 2320145  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 2328583 - 2328669
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgccta 184  Q
    |||| ||||||||||| ||||||||  ||||||| ||||||||||  |||||||||||  ||||||| || |||||||  |||||||    
T  2328583 aaggatccattcctcacgagttggggatcattaagaatctggttggtttatatctatccgacaataggctgaatggaagtttgccta 2328669  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 1542425 - 1542312
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaa 197  Q
    ||||||| |||||||||||| || ||||| | |||| |||     ||||| ||||||||||||||||||| ||||||||| | ||||| |  ||||||||    
T  1542425 aaggttctattcctcatgagctgagattcttgaaaattctcagcacattagatctatctcacaatagacttaatggaaacctacctatttttctttcaaa 1542326  T
Q  198 tctcacccaattag 211  Q
    ||| || |||||||    
T  1542325 tcttacacaattag 1542312  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 2320217 - 2320329
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaa 197  Q
    |||| |||||||| ||||||||||| ||| | |||||| |     ||||| |||||||| |||| ||||||||||||||||| ||||| || ||| |  |    
T  2320217 aaggatccattccacatgagttgggtttcctgaaaaatataacgacattacatctatctgacaacagactcaatggaaactttcctatttctcttactga 2320316  T
Q  198 tctcacccaatta 210  Q
    |||||||||||||    
T  2320317 tctcacccaatta 2320329  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 1105434 - 1105492
Alignment:
Q  213 aataataatcttactggagtgtttccccaatctctttgtaatgtccattatgtggacat 271  Q
    ||||||||||| ||||||    ||||||||||||| ||||||||| |||||||||||||    
T  1105434 aataataatctcactggaacaattccccaatctctctgtaatgtcgattatgtggacat 1105492  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 1595552 - 1595588
Alignment:
Q  235 ttccccaatctctttgtaatgtccattatgtggacat 271  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  1595552 ttccccaatctctctgtaatgtctattatgtggacat 1595588  T

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Target: scaffold0491 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 2113 - 2027
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgccta 184  Q
    ||||||||||||||| ||||||||| ||| | | |||| |  |  ||||| ||||||||||||||||||||||||||||||||||||    
T  2113 aaggttccattcctcttgagttggggttcctcagaaatatcatcacattagatctatctcacaatagactcaatggaaacttgccta 2027  T

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Target: scaffold0491; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 7037 - 6970
Alignment:
Q  143 cattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaatctcacccaatta 210  Q
    ||||| |||| |||||||||||||||||||||||| ||||||| || |||  ||||||||| ||||||    
T  7037 cattagatctgtctcacaatagactcaatggaaacctgcctatttctcttaaaaatctcacacaatta 6970  T

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Target: scaffold0491; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 1845 - 1787
Alignment:
Q  213 aataataatcttactggagtgtttccccaatctctttgtaatgtccattatgtggacat 271  Q
    ||||||||||| ||||||    ||||||||||||| ||||||||| |||||||||||||    
T  1845 aataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacat 1787  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 18740235 - 18740149
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgccta 184  Q
    ||||||||||||||| ||||||||| ||| | | |||| |  |  ||||| ||||||||||||||||||||||||||||||||||||    
T  18740235 aaggttccattcctcttgagttggggttcctcagaaatatcatcacattagatctatctcacaatagactcaatggaaacttgccta 18740149  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 18745199 - 18745113
Alignment:
Q  98 aaggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatctcacaatagactcaatggaaacttgccta 184  Q
    ||||||||||||||| ||||||||| ||| | | |||| |  |  ||||| ||||||||||||||||||||||||||||||||||||    
T  18745199 aaggttccattcctcttgagttggggttcctcagaaatatcatcacattagatctatctcacaatagactcaatggaaacttgccta 18745113  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 18724544 - 18724477
Alignment:
Q  143 cattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaatctcacccaatta 210  Q
    ||||| |||| |||||||||||||||||||||||| ||||||| || |||  ||||||||| ||||||    
T  18724544 cattagatctgtctcacaatagactcaatggaaacctgcctatttctcttaaaaatctcacacaatta 18724477  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 18750196 - 18750129
Alignment:
Q  143 cattatatctatctcacaatagactcaatggaaacttgcctatgtccctttcaaatctcacccaatta 210  Q
    ||||| |||| |||||||||||||||||||||||| ||||||| || |||  ||||||||| ||||||    
T  18750196 cattagatctgtctcacaatagactcaatggaaacctgcctatttctcttaaaaatctcacacaatta 18750129  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 18750599 - 18750543
Alignment:
Q  100 ggttccattcctcatgagttgggattcattaaaaatctggttgcattatatctatct 156  Q
    |||||||| |||||||||||||||||||||||| |||| | | ||||| ||||||||    
T  18750599 ggttccatccctcatgagttgggattcattaaatatcttggttcattaaatctatct 18750543  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 18739966 - 18739908
Alignment:
Q  213 aataataatcttactggagtgtttccccaatctctttgtaatgtccattatgtggacat 271  Q
    ||||||||||| ||||||    ||||||||||||| ||||||||| |||||||||||||    
T  18739966 aataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacat 18739908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 18744930 - 18744872
Alignment:
Q  213 aataataatcttactggagtgtttccccaatctctttgtaatgtccattatgtggacat 271  Q
    ||||||||||| ||||||    ||||||||||||| ||||||||| |||||||||||||    
T  18744930 aataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacat 18744872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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