View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0276_high_13 (Length: 297)
Name: NF0276_high_13
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 37272136 - 37271868
Alignment:
| Q |
1 |
atatagagatcttactgttttttatttgttattgttttaatatgattccatttggatctaaatctctctcaaagctttccaagcttctttcttaatttcc |
100 |
Q |
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| T |
37272136 |
atatagagatcttactgttttttattttttatttttttaatatgattccatttggatctaaatctctctcaaagctttccaagcttctttcttaatttcc |
37272037 |
T |
|
| Q |
101 |
tccaaaattctaccactttctagacacattagggtagtatataagatgatgcacccttgtaaaaggaggtgagagatacattctatagaataattgatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37272036 |
tccaaaattctaccactttctagacacattagggtagtatataagatgatgcacccttgtaaaaggaggtgagagatacattccatagaataattgatca |
37271937 |
T |
|
| Q |
201 |
agtgagggagttgtcattttccttagacttatttttgctgctgctttcggcttgatcgatcatagtgat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37271936 |
agtgagggagttgtcattttccttagacttatttttgctgctgctttcggcttgatcgatcatagtgat |
37271868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 20791365 - 20791326
Alignment:
| Q |
37 |
ttaatatgattccatttggatctaaatctctctcaaagct |
76 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
20791365 |
ttaatatgattccatttgagtctaaatctctctcaaagct |
20791326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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