View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0276_high_18 (Length: 251)
Name: NF0276_high_18
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37272248 - 37272486
Alignment:
| Q |
1 |
ttctacaactacttacagtaaagtcaacaaatttactaaacataacttgatacttaatgaacacattttgattttgcatttatcatgtcatagttagcat |
100 |
Q |
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| T |
37272248 |
ttctacaactacttatagtaaagtcaacaaatttactaaacataacttgatacttaatgaacacattttgattttgcatttatcatgtcatagttagcat |
37272347 |
T |
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| Q |
101 |
aatgaaatcaagatgtgcatactgcaggaactggagtgattcttaactagcaaactaaatgctaaccaattttaacaatcttaactaattcctaacagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272348 |
aatgaaatcaagatgtgcatactgcaggaactggagtgattcttaactagcaaactaaatgctaaccaattttaacaatcttaactaattcctaacagaa |
37272447 |
T |
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| Q |
201 |
tatatattcagaaagacnnnnnnncacaaacaacagaat |
239 |
Q |
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| T |
37272448 |
tatatattcagaaagacaaaaaaacacaaacaacagaat |
37272486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 60 - 216
Target Start/End: Original strand, 37268261 - 37268417
Alignment:
| Q |
60 |
aacacattttgattttgcatttatcatgtcatagttagcataatgaaatcaagatgtgcatactgcaggaactggagtgattcttaactagcaaactaaa |
159 |
Q |
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|||||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||| ||| || |||||| |||||||| | |||||||||||| |
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| T |
37268261 |
aacacattttgattatgcatttattatgtcatagctagcctaatgaaatcaagatgtgcatattgctggtactggaatgattcttgaatagcaaactaaa |
37268360 |
T |
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| Q |
160 |
tgctaaccaattttaacaatcttaactaattcctaacagaatatatattcagaaaga |
216 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37268361 |
tgctaaccaactctaacaatcttaactaattcctaacagaatatatattcagaaaga |
37268417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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