View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0276_high_19 (Length: 251)

Name: NF0276_high_19
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0276_high_19
NF0276_high_19
[»] chr4 (8 HSPs)
chr4 (30-251)||(3438749-3438967)
chr4 (174-251)||(640751-640828)
chr4 (163-202)||(1553005-1553044)
chr4 (105-204)||(6006094-6006193)
chr4 (116-203)||(55505339-55505426)
chr4 (102-204)||(570115-570217)
chr4 (127-203)||(370716-370792)
chr4 (159-195)||(7226125-7226161)
[»] chr8 (2 HSPs)
chr8 (105-250)||(32151068-32151213)
chr8 (39-246)||(17628205-17628409)
[»] chr1 (2 HSPs)
chr1 (119-203)||(43633978-43634062)
chr1 (176-214)||(7554326-7554364)
[»] chr6 (1 HSPs)
chr6 (178-238)||(9411195-9411255)
[»] chr3 (2 HSPs)
chr3 (174-250)||(514915-514991)
chr3 (177-248)||(51113970-51114041)
[»] chr2 (1 HSPs)
chr2 (174-231)||(45245291-45245348)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 3438967 - 3438749
Alignment:
Q  30 ataactatggctccttcatatgtcaaacaaatgatcaaacttcataagagcagtttcaaaatgctaatggaggagaaggcatccacgacgcaagaaaagt 129  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||    
T  3438967 ataattatggctccttcatatgtcaaccaaatgatcaaacttcataagagcagtttcaaaatgctaatggag---aaggcatccacgacgcaggaaaagt 3438871  T
Q  130 tccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacactt 229  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  3438870 tccctctttttgctactgaaatgataacgaggtggagcagttacctttctcaatgatggctttgaaaataccatctcgtcaacaaaattagcatacactt 3438771  T
Q  230 gatcacaaccccttaaattgac 251  Q
    |||| |||||||||||||||||    
T  3438770 gatcgcaaccccttaaattgac 3438749  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 640751 - 640828
Alignment:
Q  174 ctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaaccccttaaattgac 251  Q
    ||||||||||||||||||||||||||||||   | |||| | |||||||| ||||| || ||||||| ||||||||||    
T  640751 ctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgac 640828  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 1553044 - 1553005
Alignment:
Q  163 ggagcagttacctttctcaatgatggccttgaaaatacca 202  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  1553044 ggagcagttatctttctcaatgatggccttgaaaatacca 1553005  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 6006094 - 6006193
Alignment:
Q  105 aaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatc 204  Q
    |||||||||| |||||||||| ||||  | |||  || ||||  ||| | ||| ||| |||||||||| |||||||||||||||||||| ||||||||||    
T  6006094 aaggcatccatgacgcaagaagagttttcgcttgctgtcactacaacaaaaaccaggtggagcagttatctttctcaatgatggccttgtaaataccatc 6006193  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 55505426 - 55505339
Alignment:
Q  116 gacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 203  Q
    |||||||||| |||| | |||||| | |||| ||| || ||| ||| || || |||| ||||||||||||||||||||||||||||||    
T  55505426 gacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccat 55505339  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 570115 - 570217
Alignment:
Q  102 gagaaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaatacc 201  Q
    |||||||||| || ||| |||||| || |||||||| |||    ||||||| |||||||| ||| |||||| ||||||||||||||| ||||| |||| |    
T  570115 gagaaggcatacatgacccaagaagagctccctcttgttgttgttgaaacggtaacgaggtggaacagttatctttctcaatgatggtcttgataatatc 570214  T
Q  202 atc 204  Q
    |||    
T  570215 atc 570217  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 370716 - 370792
Alignment:
Q  127 agttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 203  Q
    ||||||||||||||| ||  | || ||||| || | ||||||  || |||||| |||||||||||||||||||||||    
T  370716 agttccctctttttgtcatgggaaagataatgaagtggagcaactatctttctgaatgatggccttgaaaataccat 370792  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 7226161 - 7226125
Alignment:
Q  159 aggaggagcagttacctttctcaatgatggccttgaa 195  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  7226161 aggaggagcaattatctttctcaatgatggccttgaa 7226125  T

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Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 32151068 - 32151213
Alignment:
Q  105 aaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatc 204  Q
    |||||||||| |||||||||| |||| ||| |||||| ||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||||||     
T  32151068 aaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctcaatgatggccttgaaaataccatt 32151167  T
Q  205 tcgacaacaaaattagcatacacttgatcacaaccccttaaattga 250  Q
    |   |||||| || ||||| ||||||||||||||||||||||||||    
T  32151168 ttatcaacaatatcagcatgcacttgatcacaaccccttaaattga 32151213  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 17628409 - 17628205
Alignment:
Q  39 gctccttcatatgtcaaacaaatgatcaaacttcataagagcagtttcaaaatgctaatggaggagaaggcatccacgacgcaagaaaagttccctcttt 138  Q
    |||||||| |||||||  ||||||| ||||||||| ||||| | |||||||||||||   |   | | |||||||| || || |||| | ||||| ||||    
T  17628409 gctccttcgtatgtcacccaaatgaccaaacttcagaagagtaatttcaaaatgcta---gcaaacatggcatccatgaagcgagaagacttcccccttt 17628313  T
Q  139 ttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaac 238  Q
    ||| |    ||| |||||| ||| || ||| ||| ||||||||||| |||||||| ||||||||||  | |||||| |||||| | ||||| || |||||    
T  17628312 ttgtcgggaaaatgataaccaggtggggcaattatctttctcaatgttggccttgcaaataccatcatgtcaacaatattagctttcacttcataacaac 17628213  T
Q  239 cccttaaa 246  Q
    ||||||||    
T  17628212 cccttaaa 17628205  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 43633978 - 43634062
Alignment:
Q  119 gcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 203  Q
    ||||||| |||| | |||||||| |||| ||| || ||||||| || ||  ||| ||||||||||||||||||||||||||||||    
T  43633978 gcaagaagagtttcttctttttgtcactcaaatgaaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccat 43634062  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 7554326 - 7554364
Alignment:
Q  176 ttctcaatgatggccttgaaaataccatctcgacaacaa 214  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  7554326 ttctcaatgatggccttgaaactaccatctcgtcaacaa 7554364  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 9411195 - 9411255
Alignment:
Q  178 ctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaac 238  Q
    |||||||| ||||||||||||||||| ||| |||||| |||||||| |||| ||| |||||    
T  9411195 ctcaatgacggccttgaaaataccatatcgtcaacaatattagcatgcactcgatgacaac 9411255  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 514991 - 514915
Alignment:
Q  174 ctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaaccccttaaattga 250  Q
    ||||||||||||||||||||||||||||||   | |||||| ||||  || ||||| || |||||| ||||||||||    
T  514991 ctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattga 514915  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 51114041 - 51113970
Alignment:
Q  177 tctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaaccccttaaatt 248  Q
    ||||||||||||||||||||||| |||   | ||||||||||||||| ||||| |  ||||||| |||||||    
T  51114041 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 51113970  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 45245348 - 45245291
Alignment:
Q  174 ctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttga 231  Q
    |||| |||| |||||||||||||||||||||  ||||| || |||||||| |||||||    
T  45245348 ctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttga 45245291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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