View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0276_high_20 (Length: 231)
Name: NF0276_high_20
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1717666 - 1717455
Alignment:
| Q |
1 |
aaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaa |
100 |
Q |
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| T |
1717666 |
aaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaa |
1717567 |
T |
|
| Q |
101 |
tagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactta |
200 |
Q |
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| T |
1717566 |
tagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactta |
1717467 |
T |
|
| Q |
201 |
tgtgatgatgtc |
212 |
Q |
| |
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|||||| ||||| |
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| T |
1717466 |
tgtgatcatgtc |
1717455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1739163 - 1738952
Alignment:
| Q |
1 |
aaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaa |
100 |
Q |
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|||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
1739163 |
aaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggaggaa |
1739064 |
T |
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| Q |
101 |
tagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactta |
200 |
Q |
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| T |
1739063 |
tagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactta |
1738964 |
T |
|
| Q |
201 |
tgtgatgatgtc |
212 |
Q |
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|||||| ||||| |
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| T |
1738963 |
tgtgatcatgtc |
1738952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 1754300 - 1754123
Alignment:
| Q |
36 |
ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct |
134 |
Q |
| |
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||||||||||| |||| ||||||||| |||| |||| || || ||||| ||||||||||||||||||| |||||||| |||||| |||||||||||| |
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| T |
1754300 |
ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct |
1754201 |
T |
|
| Q |
135 |
agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
212 |
Q |
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||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||| |||||| |||||||||| ||||| |
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| T |
1754200 |
agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc |
1754123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 1748932 - 1748807
Alignment:
| Q |
87 |
aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac |
186 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| |||||| |
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| T |
1748932 |
aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac |
1748833 |
T |
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| Q |
187 |
atcccaaatacttatgtgatgatgtc |
212 |
Q |
| |
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| |||| | |||||||||| ||||| |
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|
| T |
1748832 |
aacccagaggcttatgtgatcatgtc |
1748807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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