View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0276_high_3 (Length: 500)
Name: NF0276_high_3
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 2701562 - 2701151
Alignment:
| Q |
20 |
taaaatgctagtaattaaaaagaatcaacttcttaaaagtatagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
2701562 |
taaaatgctagtaattaaaaagaatcaacttcttaaaagtttagtgata-----ctatatttaaaatattagtaaaaaggttttgtgaagtggaaattag |
2701468 |
T |
|
| Q |
120 |
tttgttgtagctgactacgattcttctaccttttttgtttaaaatgctag-taaaaagaatcgatttcctaaaatttactggtagcttactatannnnnn |
218 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
2701467 |
tttgttgcagctgact---attcttctaccttttttg-ttaaaatgctagttaaaaagaatcgatttcttaaaacttactgatagcttactata-ttttt |
2701373 |
T |
|
| Q |
219 |
nnnngaggtaatagcttgctgataggttgctatatttaattagtacgaaccaattagtaccaaaactatataacatattgattttttctcaactcgtgt- |
317 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
2701372 |
ttttgaggtaatagcttgctgatagcttactatatttaattagtacgaaccaactagtaccaaaactatataacatattaattttatctcaaatcgtgta |
2701273 |
T |
|
| Q |
318 |
----gaatccatatccatagtaacgcgtattgtgaattatgtgactatgtttcgatcactatcca----tacttatatctatccaacataaactaactta |
409 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2701272 |
ccgcaaatccatatccatagtaacgtgtattgcgaattatgtgactatgtttcgatcaccatccatacttacttatacctatccaacataaactaactta |
2701173 |
T |
|
| Q |
410 |
tctcatcaaaagagtcaatcta |
431 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
2701172 |
tctcatcaaaagagccaatcta |
2701151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 2701686 - 2701549
Alignment:
| Q |
35 |
taaaaagaatcaacttcttaaaagtatagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattagtttgttgtagctgac |
134 |
Q |
| |
|
|||||| |||| | ||||||||| | || |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
2701686 |
taaaaataatcgatttcttaaaaatttaatgatagcttactatatttaaaatgctagtaaagaggttttgtgaagtggaaactagtttgttgcagctgac |
2701587 |
T |
|
| Q |
135 |
tacgattcttctaccttttttgtttaaaatgctagtaa |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2701586 |
tacgattcttctaccttttttgtttaaaatgctagtaa |
2701549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 2701829 - 2701643
Alignment:
| Q |
35 |
taaaaagaatcaacttcttaaaagtatagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattagtttgttgtagctgac |
134 |
Q |
| |
|
||||||||||| | | |||||| | || ||| ||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| || ||| ||| |
|
|
| T |
2701829 |
taaaaagaatcgattcattaaaaatttactgacagcttacgatatttaaaatgctggtaaaaaggttttgtgaagtggaaactagtttgctgcagccgac |
2701730 |
T |
|
| Q |
135 |
tacgattcttctac--------cttttttgtttaaaatgctagtaaaaagaatcgatttcct-aaaatttactggtagcttactata |
212 |
Q |
| |
|
|| ||||||||||| |||||| ||||||||||||||||||| |||||||||| | |||||||| || |||||||||||| |
|
|
| T |
2701729 |
tatgattcttctactttttttttttttttatttaaaatgctagtaaaaataatcgatttcttaaaaatttaatgatagcttactata |
2701643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 2701905 - 2701815
Alignment:
| Q |
93 |
aaaaagattttgtgaagtggaaattagtttgttgtagctgactacgattcttctacctt-ttttgtttaaaatgctagtaaaaagaatcgatt |
184 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
2701905 |
aaaaaggttttgtgaagtggaaactagtttgttgctgctacctacgatttttctacctttttttgtttaaaatgc--gtaaaaagaatcgatt |
2701815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 427 - 492
Target Start/End: Original strand, 17026982 - 17027045
Alignment:
| Q |
427 |
atctagggtgaatatttctccatcaaccacactctccaataaatgtagtcccttggtgttcatctc |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
17026982 |
atctagggtgaatatttctccatcaaccaca--ctccaataaatgtagtccattggtgttcatctc |
17027045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 590 times since January 2019
Visitors: 2567