View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0276_high_4 (Length: 499)
Name: NF0276_high_4
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 2701562 - 2701151
Alignment:
| Q |
20 |
taaaatgctagtaattaaaaagaatcaacttcttaaaagtttagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattag |
119 |
Q |
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| T |
2701562 |
taaaatgctagtaattaaaaagaatcaacttcttaaaagtttagtgata-----ctatatttaaaatattagtaaaaaggttttgtgaagtggaaattag |
2701468 |
T |
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| Q |
120 |
tttgttgtagctgactacgattcttctaccttttttgtttaaaatgctag-taaaaagaatcgatttcctaaaatttactggtagcttactatannnnnn |
218 |
Q |
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| T |
2701467 |
tttgttgcagctgact---attcttctaccttttttg-ttaaaatgctagttaaaaagaatcgatttcttaaaacttactgatagcttactatatttttt |
2701372 |
T |
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| Q |
219 |
nnngaggtaatagcttgctgataggttgctatatttaattagtacgaaccaattagtaccaaaactatataacatattgattttttctcaactcgtgt-- |
316 |
Q |
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| T |
2701371 |
tttgaggtaatagcttgctgatagcttactatatttaattagtacgaaccaactagtaccaaaactatataacatattaattttatctcaaatcgtgtac |
2701272 |
T |
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| Q |
317 |
---gaatccatatccatagtaacgcgtattgtgaattatgtgactatgtttcgatcactatcca----tacttatatctatccaacataaactaacttat |
409 |
Q |
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| T |
2701271 |
cgcaaatccatatccatagtaacgtgtattgcgaattatgtgactatgtttcgatcaccatccatacttacttatacctatccaacataaactaacttat |
2701172 |
T |
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| Q |
410 |
ctcatcaaaagagtcaatcta |
430 |
Q |
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| T |
2701171 |
ctcatcaaaagagccaatcta |
2701151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 2701686 - 2701549
Alignment:
| Q |
35 |
taaaaagaatcaacttcttaaaagtttagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattagtttgttgtagctgac |
134 |
Q |
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| T |
2701686 |
taaaaataatcgatttcttaaaaatttaatgatagcttactatatttaaaatgctagtaaagaggttttgtgaagtggaaactagtttgttgcagctgac |
2701587 |
T |
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| Q |
135 |
tacgattcttctaccttttttgtttaaaatgctagtaa |
172 |
Q |
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| T |
2701586 |
tacgattcttctaccttttttgtttaaaatgctagtaa |
2701549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 2701829 - 2701643
Alignment:
| Q |
35 |
taaaaagaatcaacttcttaaaagtttagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattagtttgttgtagctgac |
134 |
Q |
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| T |
2701829 |
taaaaagaatcgattcattaaaaatttactgacagcttacgatatttaaaatgctggtaaaaaggttttgtgaagtggaaactagtttgctgcagccgac |
2701730 |
T |
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| Q |
135 |
tacgattcttctac--------cttttttgtttaaaatgctagtaaaaagaatcgatttcct-aaaatttactggtagcttactata |
212 |
Q |
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| T |
2701729 |
tatgattcttctactttttttttttttttatttaaaatgctagtaaaaataatcgatttcttaaaaatttaatgatagcttactata |
2701643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 2701905 - 2701815
Alignment:
| Q |
93 |
aaaaagattttgtgaagtggaaattagtttgttgtagctgactacgattcttctacctt-ttttgtttaaaatgctagtaaaaagaatcgatt |
184 |
Q |
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| T |
2701905 |
aaaaaggttttgtgaagtggaaactagtttgttgctgctacctacgatttttctacctttttttgtttaaaatgc--gtaaaaagaatcgatt |
2701815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 426 - 491
Target Start/End: Original strand, 17026982 - 17027045
Alignment:
| Q |
426 |
atctagggtgaatatttctccatcaaccacactctccaataaatgtagtcccttggtgttcatctc |
491 |
Q |
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| T |
17026982 |
atctagggtgaatatttctccatcaaccaca--ctccaataaatgtagtccattggtgttcatctc |
17027045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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