View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0276_high_8 (Length: 408)
Name: NF0276_high_8
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 7e-96; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 34 - 311
Target Start/End: Original strand, 33083368 - 33083649
Alignment:
| Q |
34 |
acgtataaaaggttagggaattgttttatcgccaccctcattattgaaaaacacatatgtttttggaagtgcacacacaaa---------ttgcctgaaa |
124 |
Q |
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| T |
33083368 |
acgtataaaaggttagggcattgttt-atctccaccctcattattgaaaaacccatatgtttttagaagtgcacactcaaaccacataaattgtttgaaa |
33083466 |
T |
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| Q |
125 |
gtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaaccaacctttaatcaattactactccacacatctaaatggtcactttccaaaa |
224 |
Q |
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| T |
33083467 |
gtgcacactcaacccatatgttttacaaaaacatgtatttaagaacaac----ctttaatcaattacgactccacacatctaaatggtcactttccaaaa |
33083562 |
T |
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| Q |
225 |
cagtatccaaaatgttcatgaccacttagcctaatcgagttaaggacccaaaaagcagcacaacaacaaagtaacaaacacgagaga |
311 |
Q |
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| T |
33083563 |
cagtatccaaaatgttcatgaccacttagcctaattgagttaaggacccaaaaaacagcaaaacaacaaagtaacaaacacgagaga |
33083649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 33062758 - 33062929
Alignment:
| Q |
1 |
tgagctagacaaaaattgacatcattgacacatacgtataaaaggttagggaattgttttatcgccaccctcattattgaaaaacacatatgtttttgga |
100 |
Q |
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| T |
33062758 |
tgagctagacaaaaattgacatcattgacacatacgtataaaaggttagggcattgttttatctccaccctcattattgaaaaacacatatgtttttgga |
33062857 |
T |
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| Q |
101 |
agtgcacacacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaa |
172 |
Q |
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| T |
33062858 |
agtgcacacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaa |
33062929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 33063959 - 33064026
Alignment:
| Q |
107 |
cacacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
174 |
Q |
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| T |
33063959 |
cacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33064026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 33065045 - 33065112
Alignment:
| Q |
107 |
cacacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
174 |
Q |
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| T |
33065045 |
cacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33065112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 33067205 - 33067272
Alignment:
| Q |
107 |
cacacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
174 |
Q |
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| T |
33067205 |
cacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33067272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 33069343 - 33069410
Alignment:
| Q |
107 |
cacacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
174 |
Q |
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| T |
33069343 |
cacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33069410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 33066119 - 33066186
Alignment:
| Q |
107 |
cacacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
174 |
Q |
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| T |
33066119 |
cacacaaattgtttgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33066186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 33068257 - 33068324
Alignment:
| Q |
107 |
cacacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
174 |
Q |
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| T |
33068257 |
cacacaaattgtttgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33068324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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