View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0276_low_1 (Length: 534)
Name: NF0276_low_1
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 30 - 523
Target Start/End: Original strand, 42928237 - 42928712
Alignment:
| Q |
30 |
cgaagctcttcggagttgaaacacgctcccatgacatccagtgaattcctttagaatttgtggcatcatgaccccaccaaaatgaattaagcatcttctc |
129 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
42928237 |
cgaagctcttcggagttgaaagacgctcccatgacatccagtgaattcctttagaatttgtggcattatgac------------------gcatcttctc |
42928318 |
T |
|
| Q |
130 |
tatttcatgtaagcactttaatatctctttatttgttatggattgtttgtttaggtgtcagtcttcatttcttgttgaaggcttccacaactttgttgag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42928319 |
tatttcatgtaagcactttaatatctctttatttgttatggattgtttgtttaggtatcagtcttcatttcttgttgaaggctgccacaactttgttgag |
42928418 |
T |
|
| Q |
230 |
ctaagaagacaggcaagtcattttctaccttgcactgccattttgagattttctactattgtattagaacatcaaaattacctagttctataattggtac |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
42928419 |
ctaagaagacaggcaagtcattttctaccttgcactgccattttgagattttctactattgtattagaacatcaaaattacctggttctataatgggtac |
42928518 |
T |
|
| Q |
330 |
attgttaatgtatagaaatgaaattgtagttctaattatagctatgatgtccaattttttacagaaagttttgtagctaannnnnnnnactcaatgtttt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42928519 |
attgttaatgtatagaaatgaaattgtagttctaattatagctatgatgtccaattttttacagaaagttttgtagctaatttttcttactcaatgtttt |
42928618 |
T |
|
| Q |
430 |
ggagctaatgaacagactgtatatcatnnnnnnnnttaacgacctgtattatatatgcttgaatataataagataaatatacatcacagttcat |
523 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42928619 |
ggagctaatgaacagactgtatgtcataaaaaaaattaacgacctgtattatatatgcttgaatataataagataaatatacatcacagttcat |
42928712 |
T |
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