View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0276_low_11 (Length: 338)
Name: NF0276_low_11
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 30431889 - 30432214
Alignment:
| Q |
1 |
tgcaactttggtcctattttcctgtttttgtgccataacagaaccgctttgtagtgttagttaagtctcttttttcttcttccaatcgttgcaggtagct |
100 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30431889 |
tgcaactttggtcctactttcctgtttttgtgcaataacagaacctctttgtattgttagttaagtctcttttttcttcttccaatcgttgcaggtagct |
30431988 |
T |
|
| Q |
101 |
cctttgcttctactaggagctgatgatgtccatctcattacaatttggaggctcagtgccatcggtgagacaatagtattacatattattgttcattgta |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
30431989 |
cctttgcttctactaggagctgagtatggccatcttattacaatttggaggctcagtgccattggtgagacaatagtattacatattattgttcatagta |
30432088 |
T |
|
| Q |
201 |
tgaataacatttattttccatatctttgttctcatagtgtacatatttatgagcaggattttttgtcagcttcagcgtgccgaagctttattcttgctac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30432089 |
tgaataacatttattttccatatctttgttctcatagtgtacatatttatgagcaggattttttgtcaacttcagcgtgccgaagctttattcttgctac |
30432188 |
T |
|
| Q |
301 |
tctgctcagatcaaccagcgaagtat |
326 |
Q |
| |
|
||||||||||||||||||||| |||| |
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| T |
30432189 |
tctgctcagatcaaccagcgaggtat |
30432214 |
T |
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