View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0276_low_16 (Length: 290)

Name: NF0276_low_16
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0276_low_16
NF0276_low_16
[»] chr3 (8 HSPs)
chr3 (7-256)||(39559076-39559325)
chr3 (12-256)||(50814688-50814929)
chr3 (12-256)||(50860935-50861176)
chr3 (92-256)||(39558815-39558976)
chr3 (107-256)||(50814415-50814561)
chr3 (107-256)||(50861303-50861449)
chr3 (107-256)||(49857434-49857583)
chr3 (145-229)||(49760622-49760706)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 39559325 - 39559076
Alignment:
Q  7 gatggaacctttggaaatgttagctctgaccagattggataggtttagaacctctctacctgtacgaatcaccttacaaagtgccgtaaggattacatcc 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  39559325 gatggaacctttggaaatgttagctctgaccaaattggataggtttagaacctctctagctgtacgaataaccttacaaagtgccgtaaggattacatcc 39559226  T
Q  107 tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg 206  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39559225 tttgcttccaactcctctagaatgggacaaacagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg 39559126  T
Q  207 agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaat 256  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39559125 agggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaat 39559076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 50814929 - 50814688
Alignment:
Q  12 aacctttggaaatgttagctctgaccagattggataggtttagaacctctctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgc 111  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||  |||||  ||||||||||||||    
T  50814929 aaccattggaaatgttagctctgaccaaattggataggtttagaacctctctacctgtacgaatcaccatacaacgtctcgtaactattacatcctttgc 50814830  T
Q  112 ttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgaggga 211  Q
    ||||||||||||||||| ||||||||||||||||||| ||  ||| ||   | |||||||| |||||||||||| ||||||||| ||||||||| |||||    
T  50814829 ttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggacttttagcaaggga 50814730  T
Q  212 agatcgacgaaaggaacttcttcgttcaatgttaccctcttcaat 256  Q
    ||||| ||||||||||   ||| ||||||||||| ||||||||||    
T  50814729 agatcaacgaaaggaa---cttggttcaatgttatcctcttcaat 50814688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 50860935 - 50861176
Alignment:
Q  12 aacctttggaaatgttagctctgaccagattggataggtttagaacctctctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgc 111  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||  |||||  ||||||||||||||    
T  50860935 aaccattggaaatgttagctctgaccaaattggataggtttagaacctctctacctgtacgaatcaccatacaacgtctcgtaactattacatcctttgc 50861034  T
Q  112 ttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgaggga 211  Q
    ||||||||||||||||| ||||||||||||||||||| ||  ||| ||   | |||||||| |||||||||||| ||||||||| ||||||||| |||||    
T  50861035 ttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggacttttagcaaggga 50861134  T
Q  212 agatcgacgaaaggaacttcttcgttcaatgttaccctcttcaat 256  Q
    ||||| ||||||||||   ||| ||||||||||| ||||||||||    
T  50861135 agatcaacgaaaggaa---cttggttcaatgttatcctcttcaat 50861176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 92 - 256
Target Start/End: Complemental strand, 39558976 - 39558815
Alignment:
Q  92 gtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagt 191  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||| || ||| ||| || | ||| |||||||| |||||    
T  39558976 gtaatgattaaatcctttgcttccaactcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagt 39558877  T
Q  192 gaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaat 256  Q
    |||| ||||||||| |||||||||  ||||||||||   |||||||||||||||| |||||||||    
T  39558876 gaaggacttttagcaagggaagattaacgaaaggaa---cttcgttcaatgttacactcttcaat 39558815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 107 - 256
Target Start/End: Complemental strand, 50814561 - 50814415
Alignment:
Q  107 tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg 206  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||  |  || |||| | ||||| || ||||||||| ||||||||| |||||||| |    
T  50814561 tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg 50814462  T
Q  207 agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaat 256  Q
    |||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  50814461 agggaagatcaacgaaaggaa---cttcgttcaatgttaccctcttcaat 50814415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 107 - 256
Target Start/End: Original strand, 50861303 - 50861449
Alignment:
Q  107 tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg 206  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||  |  || |||| | ||||| || ||||||||| ||||||||| |||||||| |    
T  50861303 tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg 50861402  T
Q  207 agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaat 256  Q
    |||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  50861403 agggaagatcaacgaaaggaa---cttcgttcaatgttaccctcttcaat 50861449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 256
Target Start/End: Original strand, 49857434 - 49857583
Alignment:
Q  107 tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg 206  Q
    |||||||||||||| | |||||||||||| ||||||| ||||||   |||||   || |||||||| ||| ||| ||||  |||||||| | ||| ||||    
T  49857434 tttgcttccaactcttgtagaatgggacatccagataaaagttttctgatatgtccataatatgtgaaacagacggattccaagtgaaggattttgagcg 49857533  T
Q  207 agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaat 256  Q
    | |||||||| || |||||| |||| | ||||||||||| ||||||||||    
T  49857534 acggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaat 49857583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 49760622 - 49760706
Alignment:
Q  145 aagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaact 229  Q
    ||||||||||||||| ||| ||||||||||| |||||  ||  ||||||||  |||| ||||| |||||||| ||| | ||||||    
T  49760622 aagtttcaagatatattcataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaact 49760706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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