View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0276_low_2 (Length: 517)
Name: NF0276_low_2
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0276_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 37 - 448
Target Start/End: Complemental strand, 2701562 - 2701151
Alignment:
| Q |
37 |
taaaatgctagtaattaaaaagaatcaacttcttaaaagtttagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattag |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
2701562 |
taaaatgctagtaattaaaaagaatcaacttcttaaaagtttagtgata-----ctatatttaaaatattagtaaaaaggttttgtgaagtggaaattag |
2701468 |
T |
|
| Q |
137 |
tttgttgtagctgactacgattcttctaccttttttgtttaaaatgctag-taaaaagaatcgatttcctaaaatttactggtagcttactatannnnnn |
235 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
2701467 |
tttgttgcagctgact---attcttctaccttttttg-ttaaaatgctagttaaaaagaatcgatttcttaaaacttactgatagcttactata-ttttt |
2701373 |
T |
|
| Q |
236 |
nnnngaggtaatagcttgctgataggttgctatatttaattagtacgaaccaattagtaccaaaactatataacatattgattttttctcaactcgtgt- |
334 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
2701372 |
ttttgaggtaatagcttgctgatagcttactatatttaattagtacgaaccaactagtaccaaaactatataacatattaattttatctcaaatcgtgta |
2701273 |
T |
|
| Q |
335 |
----gaatccatatccatagtaacgcgtattgtgaattatgtgactatgtttcgatcactatcca----tacttatatctatccaacataaactaactta |
426 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2701272 |
ccgcaaatccatatccatagtaacgtgtattgcgaattatgtgactatgtttcgatcaccatccatacttacttatacctatccaacataaactaactta |
2701173 |
T |
|
| Q |
427 |
tctcatcaaaagagtcaatcta |
448 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
2701172 |
tctcatcaaaagagccaatcta |
2701151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 2701686 - 2701549
Alignment:
| Q |
52 |
taaaaagaatcaacttcttaaaagtttagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattagtttgttgtagctgac |
151 |
Q |
| |
|
|||||| |||| | ||||||||| |||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
2701686 |
taaaaataatcgatttcttaaaaatttaatgatagcttactatatttaaaatgctagtaaagaggttttgtgaagtggaaactagtttgttgcagctgac |
2701587 |
T |
|
| Q |
152 |
tacgattcttctaccttttttgtttaaaatgctagtaa |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2701586 |
tacgattcttctaccttttttgtttaaaatgctagtaa |
2701549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 2701829 - 2701643
Alignment:
| Q |
52 |
taaaaagaatcaacttcttaaaagtttagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattagtttgttgtagctgac |
151 |
Q |
| |
|
||||||||||| | | |||||| |||| ||| ||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| || ||| ||| |
|
|
| T |
2701829 |
taaaaagaatcgattcattaaaaatttactgacagcttacgatatttaaaatgctggtaaaaaggttttgtgaagtggaaactagtttgctgcagccgac |
2701730 |
T |
|
| Q |
152 |
tacgattcttctac--------cttttttgtttaaaatgctagtaaaaagaatcgatttcct-aaaatttactggtagcttactata |
229 |
Q |
| |
|
|| ||||||||||| |||||| ||||||||||||||||||| |||||||||| | |||||||| || |||||||||||| |
|
|
| T |
2701729 |
tatgattcttctactttttttttttttttatttaaaatgctagtaaaaataatcgatttcttaaaaatttaatgatagcttactata |
2701643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 2701905 - 2701815
Alignment:
| Q |
110 |
aaaaagattttgtgaagtggaaattagtttgttgtagctgactacgattcttctacctt-ttttgtttaaaatgctagtaaaaagaatcgatt |
201 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
2701905 |
aaaaaggttttgtgaagtggaaactagtttgttgctgctacctacgatttttctacctttttttgtttaaaatgc--gtaaaaagaatcgatt |
2701815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 444 - 509
Target Start/End: Original strand, 17026982 - 17027045
Alignment:
| Q |
444 |
atctagggtgaatatttctccatcaaccacactctccaataaatgtagtcccttggtgttcatctc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
17026982 |
atctagggtgaatatttctccatcaaccaca--ctccaataaatgtagtccattggtgttcatctc |
17027045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 531 times since January 2019
Visitors: 2567