View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0276_low_22 (Length: 251)
Name: NF0276_low_22
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0276_low_22
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37272248 - 37272486
Alignment:
Q
1
ttctacaactacttacagtaaagtcaacaaatttactaaacataacttgatacttaatgaacacattttgattttgcatttatcatgtcatagttagcat
100
Q
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
37272248
ttctacaactacttatagtaaagtcaacaaatttactaaacataacttgatacttaatgaacacattttgattttgcatttatcatgtcatagttagcat
37272347
T
Q
101
aatgaaatcaagatgtgcatactgcaggaactggagtgattcttaactagcaaactaaatgctaaccaattttaacaatcttaactaattcctaacagaa
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
37272348
aatgaaatcaagatgtgcatactgcaggaactggagtgattcttaactagcaaactaaatgctaaccaattttaacaatcttaactaattcctaacagaa
37272447
T
Q
201
tatatattcagaaagacnnnnnnncacaaacaacagaat
239
Q
||||||||||||||||| |||||||||||||||
T
37272448
tatatattcagaaagacaaaaaaacacaaacaacagaat
37272486
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 60 - 216
Target Start/End: Original strand, 37268261 - 37268417
Alignment:
Q
60
aacacattttgattttgcatttatcatgtcatagttagcataatgaaatcaagatgtgcatactgcaggaactggagtgattcttaactagcaaactaaa
159
Q
|||||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||| ||| || |||||| |||||||| | ||||||||||||
T
37268261
aacacattttgattatgcatttattatgtcatagctagcctaatgaaatcaagatgtgcatattgctggtactggaatgattcttgaatagcaaactaaa
37268360
T
Q
160
tgctaaccaattttaacaatcttaactaattcctaacagaatatatattcagaaaga
216
Q
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
T
37268361
tgctaaccaactctaacaatcttaactaattcctaacagaatatatattcagaaaga
37268417
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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