View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0276_low_27 (Length: 223)

Name: NF0276_low_27
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0276_low_27
NF0276_low_27
[»] chr3 (8 HSPs)
chr3 (1-188)||(1717642-1717829)
chr3 (106-187)||(46893416-46893497)
chr3 (133-187)||(13639459-13639513)
chr3 (106-187)||(29235677-29235758)
chr3 (119-187)||(48543213-48543281)
chr3 (106-189)||(54186997-54187080)
chr3 (118-187)||(20909363-20909432)
chr3 (155-187)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (106-188)||(30085447-30085529)
chr8 (106-187)||(33440574-33440655)
chr8 (106-187)||(28700583-28700664)
chr8 (109-187)||(6580862-6580939)
chr8 (135-185)||(31703822-31703872)
chr8 (106-170)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (103-188)||(51475233-51475318)
chr4 (119-187)||(31699549-31699617)
chr4 (123-187)||(37306476-37306540)
chr4 (111-188)||(6540258-6540335)
chr4 (133-187)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (120-187)||(709-776)
[»] chr5 (6 HSPs)
chr5 (103-187)||(41020248-41020332)
chr5 (125-187)||(42958487-42958549)
chr5 (119-187)||(5990589-5990657)
chr5 (119-187)||(18237206-18237274)
chr5 (119-187)||(30892150-30892218)
chr5 (119-187)||(32153763-32153831)
[»] chr1 (5 HSPs)
chr1 (132-187)||(932035-932090)
chr1 (106-179)||(11709656-11709729)
chr1 (106-187)||(19078941-19079022)
chr1 (106-187)||(19126829-19126910)
chr1 (119-185)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (106-188)||(17878710-17878792)
chr7 (119-187)||(557447-557515)
chr7 (132-188)||(47822035-47822091)
chr7 (106-187)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (119-185)||(5140042-5140108)
chr2 (103-179)||(864178-864254)
chr2 (119-187)||(6951739-6951808)
chr2 (108-188)||(16012002-16012082)
chr2 (119-187)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (106-187)||(7447636-7447716)
chr6 (106-186)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 1717642 - 1717829
Alignment:
Q  1 gtaattcaattggttaacaaagttttaaataaggagagtgaatcttagagaaagttctagtaagagtgttcctagcattctgtctaaggaggaatgccat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||    
T  1717642 gtaattcatttggttaacaaagttttaaataaggagagtgaatcttagagaaagtgccagtaagagtgttcctagcattctgtctaaggagaaatgctat 1717741  T
Q  101 gtacactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 188  Q
    ||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1717742 gtacattctctaacgtccactttcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataaagtggtgagat 1717829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 46893497 - 46893416
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||   ||||||||||| | |||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  46893497 ctctctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgaga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 13639459 - 13639513
Alignment:
Q  133 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||    
T  13639459 tgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgaga 13639513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 29235677 - 29235758
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||   |||||||||||  |||||||||||| ||||| || | ||| ||||||||||  ||||||||||||||||    
T  29235677 ctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgaga 29235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 48543281 - 48543213
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||  ||||||||||||||| || || | |||||||||||| | |||||||| ||||||||    
T  48543281 actctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgaga 48543213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 54187080 - 54186997
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatt 189  Q
    ||||||||||   |||||||||||  ||||| ||||||||| || || | ||| |||||||||| |||||||| ||||||||||    
T  54187080 ctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagatt 54186997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 20909432 - 20909363
Alignment:
Q  118 tactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||||  |||||||||| ||||  | ||  ||||| ||||||||| |||||||||||||||||    
T  20909432 tactctcttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgaga 20909363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 54140812 - 54140844
Alignment:
Q  155 tattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||||||| |||||||||||||||||    
T  54140812 tattggaaatggatcccacataaagtggtgaga 54140844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 30085529 - 30085447
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 188  Q
    ||||||||||  |||||||||||| |||||||||||||||  | ||| || ||||||||||||| ||||||||||||||||||    
T  30085529 ctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagat 30085447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 33440655 - 33440574
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||  |||||||||||  |||||| |||||||| || || | |||||||||||||| |||||||||||||||||    
T  33440655 ctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 33440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 28700583 - 28700664
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||   |||||||||||  || ||||| |||||| || || |||||||||||| ||| |||||||||||||||||    
T  28700583 ctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 28700664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 6580862 - 6580939
Alignment:
Q  109 tctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||  || ||||||||  ||||||||||||||| || || | ||||||||| |||| |||||||||||||||||    
T  6580862 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaat-gatcccacataaagtggtgaga 6580939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 31703872 - 31703822
Alignment:
Q  135 aaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 185  Q
    ||||| |||||||||||| |  ||||||||||||| |||||||||||||||    
T  31703872 aaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 16895271 - 16895335
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatca 170  Q
    ||||||||||   ||||||||||| | | ||||||||||||||| || |||||| ||||||||||    
T  16895271 ctctctaacactcactctcttattgaatcaaattcatgtggataccacatattgaaaatggatca 16895335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 51475318 - 51475233
Alignment:
Q  103 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 188  Q
    ||||||||||||| | |||||||||||  ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  51475318 acactctctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 51475233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 31699617 - 31699549
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||  ||||||||||||||| ||||| | |||||||||||| | |||||||| ||||||||    
T  31699617 actctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgaga 31699549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 37306540 - 37306476
Alignment:
Q  123 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||  ||||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  37306540 tcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgaga 37306476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 6540258 - 6540335
Alignment:
Q  111 taacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 188  Q
    ||||||| |||||||||||  |||||||  |||||| ||||| | ||||||||||||||  ||| |||||||||||||    
T  6540258 taacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagat 6540335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 43480299 - 43480353
Alignment:
Q  133 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||||| || || | |||| ||||||||| |||||||||||||||||    
T  43480299 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 43480353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 709 - 776
Alignment:
Q  120 ctctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||| ||||||||||||||||||| || | |||| ||||||||| |||||||||||||||||    
T  709 ctctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgaga 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 41020332 - 41020248
Alignment:
Q  103 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||||| | |||||||||||  |||||||  |||||| || || |||||||||||| ||| |||||||||||||||||    
T  41020332 acactctctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 41020248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 42958487 - 42958549
Alignment:
Q  125 ttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||| ||||||||||||||| || ||   |||||||||||||| |||||||||||||||||    
T  42958487 ttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgaga 42958549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 5990657 - 5990589
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||| |||||  ||||||||||||||| || || | |||||||||||||| |||||||| ||||||||    
T  5990657 actcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgaga 5990589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 18237274 - 18237206
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||| |||||  ||||||||||||||| ||||| | |||| |||| |||| |||||||||||||||||    
T  18237274 actcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgaga 18237206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 30892150 - 30892218
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||  ||||| ||||||||| || || | ||| |||||||||| |||||||| ||||||||    
T  30892150 actctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgaga 30892218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 32153831 - 32153763
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||  ||||||  |||||||||  || |  ||||||||||||| |||||||||||||||||    
T  32153831 actctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgaga 32153763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 932035 - 932090
Alignment:
Q  132 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||||||||| || | |||||||||||||| |||||||||||||||||    
T  932035 gtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgaga 932090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 11709729 - 11709656
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 179  Q
    ||||||||||   ||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||    
T  11709729 ctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 19078941 - 19079022
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||   |||||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19078941 ctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19079022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 19126829 - 19126910
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||   |||||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19126829 ctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19126910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 14562669 - 14562603
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 185  Q
    ||||||||||| ||||||||| |||| | || || |  ||||||||||||| |||||||||||||||    
T  14562669 actctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtga 14562603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 17878710 - 17878792
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 188  Q
    |||| |||||| ||||||||||||  |||||| |||||||| ||||| | ||| ||||| |||| ||||||||||||||||||    
T  17878710 ctctttaacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagat 17878792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 557515 - 557447
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||   |||||||||||||| ||||| | |||  ||||||||| |||||||||||||||||    
T  557515 actctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgaga 557447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 47822035 - 47822091
Alignment:
Q  132 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 188  Q
    ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  47822035 gtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 47822091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 43930110 - 43930030
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||   ||||| |||||  ||||||||||||||| || || | |||| |||||||||||| ||||||||||||||    
T  43930110 ctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgaga 43930030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 5140108 - 5140042
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 185  Q
    ||||||||||| |||||||||||||||| || || | |||| ||||||||| |||||||||||||||    
T  5140108 actctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtga 5140042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 864254 - 864178
Alignment:
Q  103 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 179  Q
    |||||||||||||   |||||||||||  ||||||||||||||| || || | ||| |||||||||| |||||||||    
T  864254 acactctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaag 864178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 6951739 - 6951808
Alignment:
Q  119 actctcttatttagtgaaa-ttcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||||||||| ||||||| ||||||||| |  || | |||| ||||||||| |||||||||||||||||    
T  6951739 actctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgaga 6951808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 16012082 - 16012002
Alignment:
Q  108 ctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 188  Q
    |||||||| ||||| ||||||| | | |||| ||||||||||  | || |||||||| ||| | |||||||||||||||||    
T  16012082 ctctaacacctactttcttattgaataaaatacatgtggatactacattttggaaatagattaaacataaagtggtgagat 16012002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 37285253 - 37285185
Alignment:
Q  119 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    ||||| |||||  ||||||||||||||| || || | |||||||||||||| ||| ||||||| |||||    
T  37285253 actcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgaga 37285185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 7447716 - 7447636
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 187  Q
    |||||||||||| |||||||| ||  ||||||||||||||| || || | ||| |||||||||| |||||||||||||||||    
T  7447716 ctctctaacatc-actctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgaga 7447636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 32439506 - 32439586
Alignment:
Q  106 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgag 186  Q
    ||||||||||   |||||||||||  ||||||||||||||| || || | |||||||||||||| ||||||||| ||||||    
T  32439506 ctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgag 32439586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 788 times since January 2019
Visitors: 2568