View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0276_low_5 (Length: 499)
Name: NF0276_low_5
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0276_low_5
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 2701562 - 2701151
Alignment:
Q
20
taaaatgctagtaattaaaaagaatcaacttcttaaaagtatagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattag
119
Q
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||||
T
2701562
taaaatgctagtaattaaaaagaatcaacttcttaaaagtttagtgata-----ctatatttaaaatattagtaaaaaggttttgtgaagtggaaattag
2701468
T
Q
120
tttgttgtagctgactacgattcttctaccttttttgtttaaaatgctag-taaaaagaatcgatttcctaaaatttactggtagcttactatannnnnn
218
Q
||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||
T
2701467
tttgttgcagctgact---attcttctaccttttttg-ttaaaatgctagttaaaaagaatcgatttcttaaaacttactgatagcttactatatttttt
2701372
T
Q
219
nnngaggtaatagcttgctgataggttgctatatttaattagtacgaaccaattagtaccaaaactatataacatattgattttttctcaactcgtgt--
316
Q
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||
T
2701371
tttgaggtaatagcttgctgatagcttactatatttaattagtacgaaccaactagtaccaaaactatataacatattaattttatctcaaatcgtgtac
2701272
T
Q
317
---gaatccatatccatagtaacgcgtattgtgaattatgtgactatgtttcgatcactatcca----tacttatatctatccaacataaactaacttat
409
Q
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
T
2701271
cgcaaatccatatccatagtaacgtgtattgcgaattatgtgactatgtttcgatcaccatccatacttacttatacctatccaacataaactaacttat
2701172
T
Q
410
ctcatcaaaagagtcaatcta
430
Q
||||||||||||| |||||||
T
2701171
ctcatcaaaagagccaatcta
2701151
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 2701686 - 2701549
Alignment:
Q
35
taaaaagaatcaacttcttaaaagtatagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattagtttgttgtagctgac
134
Q
|||||| |||| | ||||||||| | || |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |||||||
T
2701686
taaaaataatcgatttcttaaaaatttaatgatagcttactatatttaaaatgctagtaaagaggttttgtgaagtggaaactagtttgttgcagctgac
2701587
T
Q
135
tacgattcttctaccttttttgtttaaaatgctagtaa
172
Q
||||||||||||||||||||||||||||||||||||||
T
2701586
tacgattcttctaccttttttgtttaaaatgctagtaa
2701549
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 2701829 - 2701643
Alignment:
Q
35
taaaaagaatcaacttcttaaaagtatagtgatagcttactatatttaaaatgctagtaaaaagattttgtgaagtggaaattagtttgttgtagctgac
134
Q
||||||||||| | | |||||| | || ||| ||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| || ||| |||
T
2701829
taaaaagaatcgattcattaaaaatttactgacagcttacgatatttaaaatgctggtaaaaaggttttgtgaagtggaaactagtttgctgcagccgac
2701730
T
Q
135
tacgattcttctac--------cttttttgtttaaaatgctagtaaaaagaatcgatttcct-aaaatttactggtagcttactata
212
Q
|| ||||||||||| |||||| ||||||||||||||||||| |||||||||| | |||||||| || ||||||||||||
T
2701729
tatgattcttctactttttttttttttttatttaaaatgctagtaaaaataatcgatttcttaaaaatttaatgatagcttactata
2701643
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 2701905 - 2701815
Alignment:
Q
93
aaaaagattttgtgaagtggaaattagtttgttgtagctgactacgattcttctacctt-ttttgtttaaaatgctagtaaaaagaatcgatt
184
Q
|||||| |||||||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||
T
2701905
aaaaaggttttgtgaagtggaaactagtttgttgctgctacctacgatttttctacctttttttgtttaaaatgc--gtaaaaagaatcgatt
2701815
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 426 - 491
Target Start/End: Original strand, 17026982 - 17027045
Alignment:
Q
426
atctagggtgaatatttctccatcaaccacactctccaataaatgtagtcccttggtgttcatctc
491
Q
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
T
17026982
atctagggtgaatatttctccatcaaccaca--ctccaataaatgtagtccattggtgttcatctc
17027045
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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