View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0276_low_9 (Length: 449)

Name: NF0276_low_9
Description: NF0276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0276_low_9
NF0276_low_9
[»] chr6 (12 HSPs)
chr6 (51-245)||(29100772-29100966)
chr6 (51-245)||(29062836-29063030)
chr6 (51-245)||(29117690-29117884)
chr6 (382-449)||(29915689-29915756)
chr6 (379-447)||(23936519-23936587)
chr6 (397-449)||(29927354-29927406)
chr6 (379-449)||(32258859-32258929)
chr6 (405-449)||(19689809-19689853)
chr6 (268-311)||(2810114-2810157)
chr6 (415-449)||(30627228-30627262)
chr6 (379-445)||(34439344-34439410)
chr6 (397-445)||(8052485-8052533)
[»] chr1 (24 HSPs)
chr1 (379-449)||(1430472-1430542)
chr1 (382-449)||(1429013-1429080)
chr1 (397-449)||(84472-84524)
chr1 (397-449)||(6332313-6332365)
chr1 (397-448)||(43929831-43929882)
chr1 (403-449)||(43105562-43105608)
chr1 (114-172)||(4259802-4259860)
chr1 (114-172)||(4263424-4263482)
chr1 (379-449)||(5317513-5317583)
chr1 (397-449)||(10690909-10690961)
chr1 (397-449)||(30006276-30006328)
chr1 (397-449)||(40060860-40060912)
chr1 (397-449)||(50349811-50349863)
chr1 (402-449)||(24040983-24041030)
chr1 (272-327)||(38040350-38040405)
chr1 (272-327)||(49944852-49944907)
chr1 (399-449)||(11650204-11650254)
chr1 (399-441)||(52403630-52403672)
chr1 (286-327)||(1811279-1811320)
chr1 (268-313)||(34662715-34662760)
chr1 (384-449)||(50158259-50158324)
chr1 (275-327)||(38834626-38834678)
chr1 (272-320)||(44939140-44939188)
chr1 (397-445)||(48259817-48259865)
[»] chr5 (18 HSPs)
chr5 (379-449)||(15400319-15400389)
chr5 (379-446)||(14979987-14980054)
chr5 (379-449)||(4967427-4967497)
chr5 (379-445)||(31557276-31557342)
chr5 (397-449)||(12167564-12167616)
chr5 (268-327)||(1138287-1138346)
chr5 (268-327)||(27488366-27488425)
chr5 (397-449)||(166603-166655)
chr5 (397-449)||(36660572-36660624)
chr5 (401-446)||(24436498-24436543)
chr5 (268-321)||(26327561-26327614)
chr5 (286-319)||(34297262-34297295)
chr5 (290-327)||(38394447-38394484)
chr5 (397-449)||(4371497-4371549)
chr5 (397-449)||(4751484-4751536)
chr5 (272-316)||(18473505-18473549)
chr5 (275-327)||(36434755-36434807)
chr5 (397-449)||(36783502-36783554)
[»] chr8 (20 HSPs)
chr8 (379-449)||(27109756-27109826)
chr8 (268-321)||(13831430-13831483)
chr8 (395-449)||(6839353-6839407)
chr8 (399-449)||(24732094-24732144)
chr8 (268-321)||(24915239-24915292)
chr8 (397-449)||(38329009-38329061)
chr8 (403-449)||(2812922-2812968)
chr8 (392-449)||(32061408-32061465)
chr8 (399-444)||(32737917-32737961)
chr8 (397-449)||(9022542-9022594)
chr8 (278-321)||(3236355-3236398)
chr8 (392-443)||(7612649-7612700)
chr8 (379-445)||(2067850-2067916)
chr8 (383-449)||(11335979-11336045)
chr8 (286-327)||(10184639-10184680)
chr8 (290-327)||(10839782-10839819)
chr8 (272-321)||(42123040-42123089)
chr8 (397-449)||(3095467-3095519)
chr8 (397-449)||(32326679-32326731)
chr8 (397-449)||(45187250-45187302)
[»] chr4 (25 HSPs)
chr4 (395-449)||(32140941-32140995)
chr4 (395-449)||(51737277-51737331)
chr4 (379-449)||(56422938-56423008)
chr4 (381-449)||(52732734-52732802)
chr4 (268-327)||(55190736-55190795)
chr4 (400-449)||(34360148-34360197)
chr4 (392-449)||(43421076-43421133)
chr4 (287-327)||(16412253-16412293)
chr4 (397-449)||(29840198-29840250)
chr4 (397-449)||(36805407-36805459)
chr4 (401-449)||(45520419-45520467)
chr4 (392-443)||(3093497-3093548)
chr4 (286-321)||(10306456-10306491)
chr4 (268-327)||(20459310-20459369)
chr4 (268-327)||(47866055-47866114)
chr4 (397-447)||(30492865-30492915)
chr4 (379-449)||(31817138-31817208)
chr4 (379-449)||(44855387-44855457)
chr4 (403-449)||(51930719-51930765)
chr4 (290-327)||(53225736-53225773)
chr4 (280-320)||(13051801-13051841)
chr4 (275-327)||(23226969-23227021)
chr4 (397-449)||(42672532-42672584)
chr4 (401-445)||(45903377-45903421)
chr4 (397-449)||(54512166-54512218)
[»] chr7 (23 HSPs)
chr7 (390-449)||(18886792-18886851)
chr7 (272-327)||(36245450-36245505)
chr7 (382-445)||(36447550-36447613)
chr7 (268-318)||(16861540-16861590)
chr7 (397-449)||(3680877-3680929)
chr7 (268-327)||(27231903-27231962)
chr7 (272-327)||(28677391-28677446)
chr7 (414-449)||(30833066-30833101)
chr7 (382-449)||(41905874-41905941)
chr7 (272-327)||(45533249-45533304)
chr7 (286-327)||(4925910-4925951)
chr7 (268-321)||(28020070-28020123)
chr7 (404-445)||(32873127-32873168)
chr7 (397-445)||(17869388-17869436)
chr7 (275-327)||(19512750-19512802)
chr7 (401-449)||(26527356-26527404)
chr7 (272-316)||(30869260-30869304)
chr7 (397-449)||(34002086-34002138)
chr7 (405-449)||(34733456-34733500)
chr7 (276-316)||(35443624-35443664)
chr7 (275-327)||(37491288-37491340)
chr7 (397-449)||(40298985-40299037)
chr7 (273-313)||(43174318-43174358)
[»] chr3 (21 HSPs)
chr3 (268-327)||(49885398-49885457)
chr3 (379-437)||(34060024-34060082)
chr3 (401-446)||(2567970-2568015)
chr3 (392-445)||(5244735-5244788)
chr3 (397-449)||(647546-647598)
chr3 (397-449)||(38457607-38457659)
chr3 (384-449)||(26965449-26965514)
chr3 (397-449)||(31290928-31290980)
chr3 (397-449)||(43580626-43580678)
chr3 (397-449)||(44648364-44648416)
chr3 (268-327)||(29457909-29457968)
chr3 (272-327)||(54537462-54537517)
chr3 (403-449)||(4392042-4392088)
chr3 (379-449)||(25061840-25061910)
chr3 (415-449)||(43736842-43736876)
chr3 (286-327)||(5177853-5177894)
chr3 (401-449)||(1340887-1340935)
chr3 (397-449)||(27483147-27483199)
chr3 (401-449)||(37225553-37225601)
chr3 (397-449)||(42857045-42857097)
chr3 (397-449)||(46362964-46363016)
[»] chr2 (27 HSPs)
chr2 (379-449)||(4840663-4840733)
chr2 (397-449)||(24775335-24775387)
chr2 (397-449)||(44228612-44228664)
chr2 (272-327)||(32457287-32457342)
chr2 (268-327)||(45571049-45571108)
chr2 (268-327)||(45574716-45574775)
chr2 (268-327)||(45578383-45578442)
chr2 (268-327)||(45582050-45582109)
chr2 (268-327)||(45585717-45585776)
chr2 (268-327)||(45589384-45589443)
chr2 (268-327)||(45593051-45593110)
chr2 (268-327)||(45596718-45596777)
chr2 (268-327)||(45600385-45600444)
chr2 (268-327)||(45604052-45604111)
chr2 (268-327)||(45607719-45607778)
chr2 (268-327)||(45611386-45611445)
chr2 (268-327)||(45615053-45615112)
chr2 (275-321)||(7943516-7943562)
chr2 (379-445)||(40410593-40410659)
chr2 (397-449)||(7743547-7743599)
chr2 (275-318)||(9152456-9152499)
chr2 (398-449)||(11171889-11171940)
chr2 (290-327)||(28249025-28249062)
chr2 (281-318)||(38449021-38449058)
chr2 (286-318)||(12486080-12486112)
chr2 (397-449)||(37107010-37107062)
chr2 (397-449)||(40987236-40987288)
[»] scaffold0580 (2 HSPs)
scaffold0580 (379-449)||(1720-1790)
scaffold0580 (379-449)||(9459-9529)
[»] scaffold0189 (1 HSPs)
scaffold0189 (397-449)||(13022-13074)
[»] scaffold0072 (1 HSPs)
scaffold0072 (401-449)||(12040-12088)
[»] scaffold0194 (1 HSPs)
scaffold0194 (379-449)||(8295-8365)
[»] scaffold0238 (1 HSPs)
scaffold0238 (397-449)||(15994-16046)
[»] scaffold0009 (1 HSPs)
scaffold0009 (280-312)||(18452-18484)
[»] scaffold0002 (1 HSPs)
scaffold0002 (286-318)||(423336-423368)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 29100966 - 29100772
Alignment:
Q  51 ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac 150  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29100966 ataacacagctgtataatgaaggtgcagggcacggaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac 29100867  T
Q  151 aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatatctgtcctccttccatattaagaaagaatcta 245  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  29100866 aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatatctggcctcctaccatactaagaaaggatcta 29100772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 29063030 - 29062836
Alignment:
Q  51 ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac 150  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29063030 ataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac 29062931  T
Q  151 aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatatctgtcctccttccatattaagaaagaatcta 245  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||| |||||||| |||||    
T  29062930 aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatatatggcctcctaccatactaagaaaggatcta 29062836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 29117884 - 29117690
Alignment:
Q  51 ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac 150  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29117884 ataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac 29117785  T
Q  151 aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatatctgtcctccttccatattaagaaagaatcta 245  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||| |||||||| |||||    
T  29117784 aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatatgtggcctcctaccatactaagaaaggatcta 29117690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 449
Target Start/End: Complemental strand, 29915756 - 29915689
Alignment:
Q  382 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  29915756 gttttaggtgttggcacacatattaagaaattgaatgaaataataattagaaataacacttttactaa 29915689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 23936519 - 23936587
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttact 447  Q
    ||||||||||| ||||| ||||| |||||||||| |||||||||||| ||||||||||||| |||||||    
T  23936519 gtcgttttaggtgttgggacacatattaagaaatggaatgaaataatcattagatataacatttttact 23936587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 29927406 - 29927354
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||| |||| |||||||||||| |||||| ||||||||||||||||    
T  29927406 acacagattaaaaaatagaatgaaataatcattagacataacacttttactaa 29927354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 32258929 - 32258859
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||||| |||  |||||||||||||||| || ||||||||| ||| |||||||| ||||||||||    
T  32258929 gtcgctttaggctttgacacacagattaagaaatcgattgaaataatcattggatataacgcttttactaa 32258859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 19689809 - 19689853
Alignment:
Q  405 taagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||    
T  19689809 taagaaatggaatgaaataattattagatataacaattttactaa 19689853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 2810157 - 2810114
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaa 311  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||    
T  2810157 ctatttctagactaggtacatcaattattgaatgaatctaaaaa 2810114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 30627262 - 30627228
Alignment:
Q  415 aatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||| |||||||||||||||||||||||    
T  30627262 aatgaaataatcattagatataacacttttactaa 30627228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 34439344 - 34439410
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    ||||||||||| ||||  ||| | ||||||||||  ||||||||||| ||||||||||||| |||||    
T  34439344 gtcgttttaggtgttgacacataaattaagaaatgaaatgaaataatcattagatataacattttta 34439410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 445
Target Start/End: Complemental strand, 8052533 - 8052485
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    ||||| ||||||||||  ||||||||||| |||||| ||||||||||||    
T  8052533 acacaaattaagaaatgaaatgaaataatcattagacataacactttta 8052485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 1430472 - 1430542
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1430472 gtcgttttaggtgttggcacacagattaagaaatttaatgaaataataattagatataacacttttactaa 1430542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 382 - 449
Target Start/End: Complemental strand, 1429080 - 1429013
Alignment:
Q  382 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||| ||||  ||| | ||||||||||||||||||||||| |||||||||||||||||||||||    
T  1429080 gttttaggtgttgacacatatattaagaaattgaatgaaataattattagatataacacttttactaa 1429013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 84472 - 84524
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  84472 acacagattaaggaattgaatgaaataatcattagacataacacttttactaa 84524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 6332365 - 6332313
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  6332365 acacaaattaagaaattgaatgaaataatcattagacataacacttttactaa 6332313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 448
Target Start/End: Complemental strand, 43929882 - 43929831
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttacta 448  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  43929882 acacaaattaagaaattgaatgaaataatcattagacataacacttttacta 43929831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 43105562 - 43105608
Alignment:
Q  403 attaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  43105562 attaagaaattgaatgaaataatcattagacataacacttttactaa 43105608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 4259860 - 4259802
Alignment:
Q  114 aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat 172  Q
    ||||| |||||||||||||||||||  |||||||||| |||| || |||||||||||||    
T  4259860 aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat 4259802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 4263482 - 4263424
Alignment:
Q  114 aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat 172  Q
    ||||| |||||||||||||||||||  |||||||||| |||| || |||||||||||||    
T  4263482 aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat 4263424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 5317513 - 5317583
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||  | ||||| |||||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  5317513 gtcgttttaggcaatagtacatagattaaggaatgaaatgaaataatcattagacataacacttttactaa 5317583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 10690909 - 10690961
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||||||||  ||||||||||| ||||||||||||| |||||||||    
T  10690909 acacatattaagaaatgaaatgaaataatcattagatataacatttttactaa 10690961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 30006328 - 30006276
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||  |||||||||||||||| |||||| |||||||| |||||||    
T  30006328 acacagattaatgaattgaatgaaataatcattagacataacactattactaa 30006276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 40060860 - 40060912
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||||||||  ||||||||||| |||||| ||||||||||||||||    
T  40060860 acacatattaagaaatgaaatgaaataatgattagacataacacttttactaa 40060912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 50349811 - 50349863
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| ||| |||||||||||| |||||| ||||||||||||||||    
T  50349811 acacaaattaaggaatggaatgaaataatcattagacataacacttttactaa 50349863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 449
Target Start/End: Original strand, 24040983 - 24041030
Alignment:
Q  402 gattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||| ||| |||||||||||| |||||| ||||||||||||||||    
T  24040983 gattaaggaatggaatgaaataatcattagacataacacttttactaa 24041030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 38040350 - 38040405
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||| |||| ||||||||| | ||||||||||||||||||| |||| |||||    
T  38040350 ttctagacaagatacatcaattaatcaatgaatctaaaaagtcaaatttttcttat 38040405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 49944907 - 49944852
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||| |||| ||||||||||| |||||||||||||||| || |||| |||||    
T  49944907 ttctagacaagatacatcaattattcaatgaatctaaaaagttaaatttttcttat 49944852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 11650254 - 11650204
Alignment:
Q  399 acagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||||||||||||||||  ||||||||||  | |||||||||    
T  11650254 acagattaagaaattgaatgaaataaccattagatatagtatttttactaa 11650204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 52403672 - 52403630
Alignment:
Q  399 acagattaagaaattgaatgaaataataattagatataacact 441  Q
    |||||||||||||| |||||||||||| ||| |||||||||||    
T  52403672 acagattaagaaatggaatgaaataatcattggatataacact 52403630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 1811279 - 1811320
Alignment:
Q  286 catcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||||||||||||||||||| | ||||||| |||||    
T  1811279 catcaattatttaatgaatctaaaaaatgaatttttgcttat 1811320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 34662760 - 34662715
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagt 313  Q
    |||||||||| |||| | ||||||||||| ||||||||||||||||    
T  34662760 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagt 34662715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 449
Target Start/End: Original strand, 50158259 - 50158324
Alignment:
Q  384 tttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||| |||  ||| ||||||||||||  |||| |||||| ||| |||||||||||||||||||    
T  50158259 tttaggctttgacacatagattaagaaatataatgcaataatcattggatataacacttttactaa 50158324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 38834678 - 38834626
Alignment:
Q  275 tagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||| || ||||| |||||||||||||||||||| | ||||||| |||||    
T  38834678 tagactatatacatcatttatttaatgaatctaaaaaataaatttttgcttat 38834626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 44939140 - 44939188
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttt 320  Q
    ||||||| ||||| ||||||||| | |||||||||||||| ||||||||    
T  44939140 ttctagattagatacatcaattactcaatgaatctaaaaaatcaatttt 44939188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 445
Target Start/End: Original strand, 48259817 - 48259865
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    |||||||||||| ||| ||||||||||||  ||||| ||||||||||||    
T  48259817 acacagattaaggaatagaatgaaataatcgttagacataacactttta 48259865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 15400389 - 15400319
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  15400389 gtcgttttaggtgttggcacacagattaaaaaattgaatgaaataattattagatataacacttttactaa 15400319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 379 - 446
Target Start/End: Original strand, 14979987 - 14980054
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttac 446  Q
    |||| ||||||| |||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  14979987 gtcgctttaggctttggcacacagattaagaaatggaatgaaataatcattggatataacacttttac 14980054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 4967427 - 4967497
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||||| |||  |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  4967427 gtcgctttaggctttgacacacagattaagaaatggaatgaaataatcattggatataacgcttttactaa 4967497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 31557276 - 31557342
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    ||||||||||| |||| |||||| |||||||||| |||||||||||| |||| |||||| |||||||    
T  31557276 gtcgttttaggtgttgatacacatattaagaaatagaatgaaataatcattaaatataatactttta 31557342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 12167564 - 12167616
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||    
T  12167564 acacaaattaagaaattgaatgaaataatcattagacaaaacacttttactaa 12167616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 1138287 - 1138346
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||| |||||    
T  1138287 ctatttctagtctagatacattaattatttaatgaatttaaaaaatcaattttttcttat 1138346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 27488425 - 27488366
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||||| ||||||||||| |||||||||||||| | ||||||| |||||    
T  27488425 ctatttctaggctagatacatcaattattgaatgaatctaaaaaattaattttttcttat 27488366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 166603 - 166655
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  166603 acacagattaaggaatgaaatgaaataatcattagaaataacacttttactaa 166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 36660624 - 36660572
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  36660624 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaa 36660572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 24436498 - 24436543
Alignment:
Q  401 agattaagaaattgaatgaaataataattagatataacacttttac 446  Q
    |||||||| |||  ||||||||||| ||||||||||||||||||||    
T  24436498 agattaaggaataaaatgaaataatcattagatataacacttttac 24436543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 26327614 - 26327561
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 321  Q
    |||||| |||| ||| | ||||||||||| |||||||||||||||| |||||||    
T  26327614 ctatttttagattaggtacatcaattattgaatgaatctaaaaagttaattttt 26327561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 34297262 - 34297295
Alignment:
Q  286 catcaattatttaatgaatctaaaaagtcaattt 319  Q
    ||||||||| ||||||||||||||||||||||||    
T  34297262 catcaattacttaatgaatctaaaaagtcaattt 34297295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 38394484 - 38394447
Alignment:
Q  290 aattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  38394484 aattattcaatgaatctaaaaagtcaattttttcttat 38394447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 4371549 - 4371497
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| ||| |||||||||||| |||||| ||| ||||||||||||    
T  4371549 acacaaattaaggaatggaatgaaataatcattagacatagcacttttactaa 4371497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 4751484 - 4751536
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  4751484 acacatattaaggaatgaaatgaaataatcattagacataacacttttactaa 4751536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 18473549 - 18473505
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaa 316  Q
    |||||||| |||| ||||||||| | |||||||||||||||||||    
T  18473549 ttctagacaagatacatcaattactcaatgaatctaaaaagtcaa 18473505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 36434755 - 36434807
Alignment:
Q  275 tagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||| |||| ||||||||| |||||||||||||||||| || |||| |||||    
T  36434755 tagacaagatacatcaattacttaatgaatctaaaaagttaaatttttcttat 36434807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 36783554 - 36783502
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||| ||  ||||||||||| |||||| |||||| |||||||||    
T  36783554 acacagattaagagatgaaatgaaataatcattagacataacatttttactaa 36783502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 27109756 - 27109826
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||||    
T  27109756 gtcgttttaggtgttggcacacatattaagaaatagaatgaaataatcattagatataacacttttactaa 27109826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 13831430 - 13831483
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 321  Q
    |||||| ||||||| || ||||||||||||||||||||||||||||||||||||    
T  13831430 ctatttttagactaaatacatcaattatttaatgaatctaaaaagtcaattttt 13831483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 449
Target Start/End: Complemental strand, 6839407 - 6839353
Alignment:
Q  395 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||| |||| |||||||||||| |||||| ||||||||||||||||    
T  6839407 gtacacagattaaaaaatggaatgaaataatcattagacataacacttttactaa 6839353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 24732144 - 24732094
Alignment:
Q  399 acagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  24732144 acagattaagaaattgaatgaaatagtcattggatataacacttttactaa 24732094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 24915239 - 24915292
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 321  Q
    |||||||||  |||||| |||||||||||||||||||||||||||| |||||||    
T  24915239 ctatttctaagctagatacatcaattatttaatgaatctaaaaagttaattttt 24915292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 38329009 - 38329061
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| ||| |||||||||||| |||||| ||||||||||||||||    
T  38329009 acacagattaaggaatggaatgaaataatcattagacataacacttttactaa 38329061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 2812968 - 2812922
Alignment:
Q  403 attaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||    
T  2812968 attaagtaattgaatgaaataatcattagacataacacttttactaa 2812922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 32061408 - 32061465
Alignment:
Q  392 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||| |||||||||||||| |||||||| || ||| ||||||||||||||||    
T  32061408 ttggcacacatattaagaaattgaacgaaataatcatcagacataacacttttactaa 32061465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 399 - 444
Target Start/End: Complemental strand, 32737961 - 32737917
Alignment:
Q  399 acagattaagaaattgaatgaaataataattagatataacactttt 444  Q
    |||||||||||||||||||||||| || ||||||||||||||||||    
T  32737961 acagattaagaaattgaatgaaat-atcattagatataacactttt 32737917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 9022594 - 9022542
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||| |||| ||||||| |||| |||||| ||||||||||||||||    
T  9022594 acacagattaaaaaatggaatgaattaatcattagacataacacttttactaa 9022542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 3236398 - 3236355
Alignment:
Q  278 actagattcatcaattatttaatgaatctaaaaagtcaattttt 321  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  3236398 actagatacatcaattattcaatgaatttaaaaagtcaattttt 3236355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 7612700 - 7612649
Alignment:
Q  392 ttggtacacagattaagaaattgaatgaaataataattagatataacacttt 443  Q
    |||| |||||||||||||||| |||||||||||| ||| |||||||| ||||    
T  7612700 ttggcacacagattaagaaatagaatgaaataatcattggatataacgcttt 7612649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 2067916 - 2067850
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    |||| ||||||| |||  ||| |||||||||||| |||||||||||| ||| |||||||| ||||||    
T  2067916 gtcgctttaggctttgacacatagattaagaaatggaatgaaataatcatttgatataacgctttta 2067850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 449
Target Start/End: Original strand, 11335979 - 11336045
Alignment:
Q  383 ttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||| |||  ||||||||||||||||  |||||| |||  ||| |||||||||||||||||||    
T  11335979 ttttaggctttgacacacagattaagaaatgtaatgaagtaaccattcgatataacacttttactaa 11336045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 10184639 - 10184680
Alignment:
Q  286 catcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||||||| ||||||||||||||||| |||||| |||||    
T  10184639 catcaattattcaatgaatctaaaaagtcgattttttcttat 10184680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 10839819 - 10839782
Alignment:
Q  290 aattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  10839819 aattattcaatgaatctaaaaagtcaattttttcttat 10839782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 42123040 - 42123089
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 321  Q
    |||||||| |||| ||| ||||| | ||||||||||||||||||||||||    
T  42123040 ttctagacaagatacattaattactcaatgaatctaaaaagtcaattttt 42123089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 3095467 - 3095519
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||| |||| |||||||||||| |||| |||| |||||||||||||    
T  3095467 acacaaattaaaaaatagaatgaaataatcattaaatatgacacttttactaa 3095519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 32326679 - 32326731
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| ||||||  |||||||||||||||    
T  32326679 acacagattaaggaatgaaatgaaataatcattagacgtaacacttttactaa 32326731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 45187250 - 45187302
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| |||||| || |||||||||||||    
T  45187250 acacagattaaggaatataatgaaataatcattagacatgacacttttactaa 45187302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 449
Target Start/End: Original strand, 32140941 - 32140995
Alignment:
Q  395 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  32140941 gtacacagattaagaaattgaatgaaataatcattagacataacacttttactaa 32140995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 449
Target Start/End: Original strand, 51737277 - 51737331
Alignment:
Q  395 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  51737277 gtacacaaattaaggaatagaatgaaataataattagacataacacttttactaa 51737331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 56422938 - 56423008
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||||| |||  |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  56422938 gtcgctttaggctttgacacacagattaagaaatcgaatgaaataatcattggatataacgcttttactaa 56423008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 52732802 - 52732734
Alignment:
Q  381 cgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||| |||  ||| ||||||| |||| |||||||||||| ||| |||||||||||||||||||    
T  52732802 cgttttaggctttgacacatagattaaaaaatggaatgaaataatcattggatataacacttttactaa 52732734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 55190736 - 55190795
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||||| ||||||||||| ||||||| |||||| ||||||||| |||||    
T  55190736 ctatttctaggctagatacatcaattattgaatgaatataaaaaatcaattttttcttat 55190795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 34360197 - 34360148
Alignment:
Q  400 cagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||| |||  ||||||||||| |||||||||||||||||||||||    
T  34360197 cagattaaggaatgaaatgaaataatcattagatataacacttttactaa 34360148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 43421076 - 43421133
Alignment:
Q  392 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||| |||||||||| |||||||||||| ||| ||||||| |||||||||||    
T  43421076 ttggcacacaaattaagaaatggaatgaaataatcattggatataatacttttactaa 43421133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 16412293 - 16412253
Alignment:
Q  287 atcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  16412293 atcaattattcaatgaatctaaaaagtcaattttttcttat 16412253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 29840250 - 29840198
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| ||| |||||||||||| |||||| ||||||||||||||||    
T  29840250 acacaaattaaggaatggaatgaaataatcattagacataacacttttactaa 29840198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 36805407 - 36805459
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  36805407 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaa 36805459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 45520419 - 45520467
Alignment:
Q  401 agattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||| ||||||| |||||| ||||||||||||||||    
T  45520419 agattaagaaatggaataaaataatcattagacataacacttttactaa 45520467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 3093548 - 3093497
Alignment:
Q  392 ttggtacacagattaagaaattgaatgaaataataattagatataacacttt 443  Q
    |||| ||| ||||||||||||||||| ||||||| |||||| ||||||||||    
T  3093548 ttggcacatagattaagaaattgaataaaataatcattagacataacacttt 3093497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 10306456 - 10306491
Alignment:
Q  286 catcaattatttaatgaatctaaaaagtcaattttt 321  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10306456 catcaattatttaatcaatctaaaaagtcaattttt 10306491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 20459310 - 20459369
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| || |||| |||||    
T  20459310 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaactttttcttat 20459369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 47866114 - 47866055
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| || |||| |||||    
T  47866114 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaactttttcttat 47866055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 30492915 - 30492865
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttact 447  Q
    ||||| |||||| ||| |||||||||||| |||||| ||||||||||||||    
T  30492915 acacaaattaaggaatggaatgaaataatcattagacataacacttttact 30492865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 31817138 - 31817208
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||||| |||  ||||| |||||||||| |||||||||||| ||| ||||||||  |||||||||    
T  31817138 gtcgctttaggctttgacacacaaattaagaaatggaatgaaataatcattggatataacgtttttactaa 31817208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 44855457 - 44855387
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| |||| || |||| ||||| |||||||||| |||||||||||| |||  ||||||| ||||||||||    
T  44855457 gtcgctttacgctttggcacacaaattaagaaatagaatgaaataatcattgaatataacgcttttactaa 44855387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 51930765 - 51930719
Alignment:
Q  403 attaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||| |||||||||||||||| |||||||| ||||||||||    
T  51930765 attatgaaatggaatgaaataataattggatataacgcttttactaa 51930719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 53225736 - 53225773
Alignment:
Q  290 aattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  53225736 aattattcaatgaatctaaaaagtcaattttttcttat 53225773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 13051801 - 13051841
Alignment:
Q  280 tagattcatcaattatttaatgaatctaaaaagtcaatttt 320  Q
    ||||||||||| ||||||||||||| |||||||| ||||||    
T  13051801 tagattcatcatttatttaatgaatttaaaaagtaaatttt 13051841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 23227021 - 23226969
Alignment:
Q  275 tagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||| |||| ||| |||||  ||||||||||||||||||||||||| |||||    
T  23227021 tagacaagatacattaattacataatgaatctaaaaagtcaattttttcttat 23226969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 42672584 - 42672532
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  42672584 acacaaattaaggaatataatgaaataatcattagacataacacttttactaa 42672532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 45903377 - 45903421
Alignment:
Q  401 agattaagaaattgaatgaaataataattagatataacactttta 445  Q
    |||||||||||| |||||||||||| ||| |||||||| ||||||    
T  45903377 agattaagaaatagaatgaaataatcattggatataacgctttta 45903421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 54512218 - 54512166
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||||||||  ||||||||||||||| ||||||||  |||||||||    
T  54512218 acacatattaagaaatgaaatgaaataataattggatataacgtttttactaa 54512166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 18886851 - 18886792
Alignment:
Q  390 cgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||||||| ||||||||||    
T  18886851 cgttggcacacagactaagaaatggaatgaaataatcattagatataacgcttttactaa 18886792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 36245450 - 36245505
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||| |||| ||||||||| | |||||||||||||||||||||||| |||||    
T  36245450 ttctagacaagatacatcaattactcaatgaatctaaaaagtcaattttttcttat 36245505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 36447550 - 36447613
Alignment:
Q  382 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    ||||||||| |||||| |||||||||||||| |||||||||||| | | |||||||| ||||||    
T  36447550 gttttaggctttggtatacagattaagaaatggaatgaaataattactggatataactctttta 36447613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 16861590 - 16861540
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatt 318  Q
    |||||| ||||||| || ||||||||||| |||||||||||||||||||||    
T  16861590 ctatttttagactatatacatcaattattcaatgaatctaaaaagtcaatt 16861540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 3680877 - 3680929
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||| |||| |||||||||||| |||||| |||| |||||||||||    
T  3680877 acacagattaaaaaatggaatgaaataatcattagacataaaacttttactaa 3680929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 27231903 - 27231962
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| || |||| |||||    
T  27231903 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaactttttcttat 27231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 28677391 - 28677446
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||| |||| ||||||||| | ||| |||||||||||||||||||| |||||    
T  28677391 ttctagacaagatacatcaattactcaataaatctaaaaagtcaattttttcttat 28677446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 449
Target Start/End: Original strand, 30833066 - 30833101
Alignment:
Q  414 gaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||||||||||||||||||||||    
T  30833066 gaatgaaataattattagatataacacttttactaa 30833101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 449
Target Start/End: Original strand, 41905874 - 41905941
Alignment:
Q  382 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||| |||  ||||||||||||||||  | ||||||||| ||| |||||||| ||||||||||    
T  41905874 gttttaggctttgacacacagattaagaaatgaactgaaataatcattggatataacgcttttactaa 41905941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 45533304 - 45533249
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||| |||| ||| |||||  ||||||||||||||||||||||||| |||||    
T  45533304 ttctagacaagatacattaattacataatgaatctaaaaagtcaattttttcttat 45533249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 4925951 - 4925910
Alignment:
Q  286 catcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||||| ||||||||||||||||||||| |||| |||||    
T  4925951 catcaattacttaatgaatctaaaaagtcaaatttttcttat 4925910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 28020070 - 28020123
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 321  Q
    ||||||||||   |||| || ||||||||||||||||||||||| |||||||||    
T  28020070 ctatttctaggtcagatacaacaattatttaatgaatctaaaaaatcaattttt 28020123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 32873127 - 32873168
Alignment:
Q  404 ttaagaaattgaatgaaataataattagatataacactttta 445  Q
    ||||||||||||||| |||||| ||||||||||||| |||||    
T  32873127 ttaagaaattgaatgcaataatcattagatataacattttta 32873168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 445
Target Start/End: Complemental strand, 17869436 - 17869388
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||    
T  17869436 acacagattaaggaatgaaatgaaataatcattagacataacactttta 17869388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 19512802 - 19512750
Alignment:
Q  275 tagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| | ||||||||| ||||||| ||||||||||||| || |||||    
T  19512802 tagactagatacgtcaattattcaatgaatttaaaaagtcaattgtttcttat 19512750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 26527356 - 26527404
Alignment:
Q  401 agattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| ||||| |||||| |||||| ||||||| ||||||||    
T  26527356 agattaagaaatggaatgcaataatcattagacataacacctttactaa 26527404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 30869260 - 30869304
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaa 316  Q
    |||||||| |||| ||||||||| | |||||||||||||||||||    
T  30869260 ttctagacaagatacatcaattactcaatgaatctaaaaagtcaa 30869304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 34002086 - 34002138
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||| ||| ||||    
T  34002086 acacagattaagaaatgaaatgaaataatcattggatataacacctttgctaa 34002138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 34733500 - 34733456
Alignment:
Q  405 taagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||  ||||||||||| |||||| ||||||||||||||||    
T  34733500 taagaaatgaaatgaaataatcattagacataacacttttactaa 34733456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 35443664 - 35443624
Alignment:
Q  276 agactagattcatcaattatttaatgaatctaaaaagtcaa 316  Q
    ||||||||| |||||||||| |||| |||||||||||||||    
T  35443664 agactagatacatcaattatctaataaatctaaaaagtcaa 35443624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 37491340 - 37491288
Alignment:
Q  275 tagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||| || ||||| ||||||||| |||||||||||| ||||||| |||||    
T  37491340 tagactacatacatcatttatttaataaatctaaaaagtaaatttttgcttat 37491288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 40299037 - 40298985
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| |||  ||||||||||||||| || ||||||||||||||||    
T  40299037 acacaaattaaggaatgaaatgaaataataattggacataacacttttactaa 40298985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 43174358 - 43174318
Alignment:
Q  273 tctagactagattcatcaattatttaatgaatctaaaaagt 313  Q
    ||||||| |||| ||||||||||||||| ||||||||||||    
T  43174358 tctagacaagatacatcaattatttaattaatctaaaaagt 43174318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 49885457 - 49885398
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| | ||||||| |||||    
T  49885457 ctatttctagactagatacatcaattattgaatgaatctaaaaaattaattttttcttat 49885398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 34060082 - 34060024
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataa 437  Q
    |||| ||||||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  34060082 gtcgctttaggctttggcacacagattaagaaatggaatgaaataataattggatataa 34060024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 2567970 - 2568015
Alignment:
Q  401 agattaagaaattgaatgaaataataattagatataacacttttac 446  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||    
T  2567970 agattaaggaattgaatgaaataatcattagatataacacttttac 2568015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 5244788 - 5244735
Alignment:
Q  392 ttggtacacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    |||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  5244788 ttggcacacatattaagaaattgaatgaaataatcattagacataacactttta 5244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 647546 - 647598
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||||||  ||||||||||| ||||||||||||| |||||||||    
T  647546 acacagattaagaaatgaaatgaaataatcattagatataacagttttactaa 647598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 38457659 - 38457607
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||||||||||||||||||||| |||| | ||||||||||||||||    
T  38457659 acacaaattaagaaattgaatgaaataatcattacacataacacttttactaa 38457607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 449
Target Start/End: Original strand, 26965449 - 26965514
Alignment:
Q  384 tttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||| |||  ||||||||||||||||  ||||||||||| ||| |||||||| ||||||||||    
T  26965449 tttaggctttgacacacagattaagaaataaaatgaaataatcattggatataacgcttttactaa 26965514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 31290928 - 31290980
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  31290928 acacagattaaggaatgaaatgaaataattattagacataacacttttactaa 31290980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 43580678 - 43580626
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| ||| |||||||||||| |||| |||||||| |||||||||    
T  43580678 acacagattaaggaatagaatgaaataatcattacatataacatttttactaa 43580626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 44648364 - 44648416
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  44648364 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaa 44648416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 29457909 - 29457968
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||||||||||| | ||||||| ||| |||||||||||||||| || |||| |||||    
T  29457909 ctatttctagactaggtacatcaatcattgaatgaatctaaaaagttaactttttcttat 29457968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 54537517 - 54537462
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||||||||| ||||||||| | ||||||||| ||||||||| |||| |||||    
T  54537517 ttctagactagatacatcaattactcaatgaatcttaaaagtcaaatttttcttat 54537462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 4392088 - 4392042
Alignment:
Q  403 attaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||  ||||||||||| |||||| ||||||||||||||||    
T  4392088 attaagaaatgaaatgaaataattattagacataacacttttactaa 4392042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 25061910 - 25061840
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||| || | | ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  25061910 gtcgttttagccgattgcacacatattaaggaatgaaatgaaataatcattagacataacacttttactaa 25061840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 449
Target Start/End: Original strand, 43736842 - 43736876
Alignment:
Q  415 aatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||| |||||||||||||||||||||||    
T  43736842 aatgaaataatcattagatataacacttttactaa 43736876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 5177853 - 5177894
Alignment:
Q  286 catcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||||||| |||||||||||||||| ||||||| |||||    
T  5177853 catcaattattgaatgaatctaaaaagttaattttttcttat 5177894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 1340887 - 1340935
Alignment:
Q  401 agattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||  ||| ||||||||||||||||||| ||||||||||| ||||    
T  1340887 agattaaagaatggaatgaaataataattagacataacactttttctaa 1340935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 27483147 - 27483199
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  27483147 acacaaattaaggaatgaaatgaaataatcattagacataacacttttactaa 27483199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 37225553 - 37225601
Alignment:
Q  401 agattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||||||||||  ||||||||||| ||| ||||||| |||||||||||    
T  37225553 agattaagaaatacaatgaaataatcattggatataatacttttactaa 37225601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 42857045 - 42857097
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| |||||| |||||| |||||||||    
T  42857045 acacagattaaggaatcaaatgaaataatcattagacataacatttttactaa 42857097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 46362964 - 46363016
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| |||||||||||||||| ||||||  ||||| |||||||||    
T  46362964 acacatattaaggaattgaatgaaataatcattagacctaacatttttactaa 46363016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 4840663 - 4840733
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||| ||||| |||||||||| |||||||||||| ||| ||||||||  |||||||||    
T  4840663 gtcgttttaggctttggcacacatattaagaaatggaatgaaataatcattggatataacgtttttactaa 4840733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 24775387 - 24775335
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||||  ||||||||||||||| |||||||||||||||||||||||    
T  24775387 acacaaattaaggtattgaatgaaataatcattagatataacacttttactaa 24775335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 44228664 - 44228612
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  44228664 acacggattaaaaaatggaatgaaataatcattagatataacacttttactaa 44228612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 32457287 - 32457342
Alignment:
Q  272 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||| |||| |||||    
T  32457287 ttctagacaagatacatcaattacttaatgaatctaaaaagtcaaatttttcttat 32457342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45571108 - 45571049
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45571108 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45571049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45574775 - 45574716
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45574775 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45574716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45578442 - 45578383
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45578442 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45578383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45582109 - 45582050
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45582109 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45582050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45585776 - 45585717
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45585776 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45585717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45589443 - 45589384
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45589443 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45589384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45593110 - 45593051
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45593110 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45593051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45596777 - 45596718
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45596777 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45596718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45600444 - 45600385
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45600444 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45600385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45604111 - 45604052
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45604111 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45604052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45607778 - 45607719
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45607778 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45607719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45611445 - 45611386
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45611445 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45611386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45615112 - 45615053
Alignment:
Q  268 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45615112 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45615053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 7943516 - 7943562
Alignment:
Q  275 tagactagattcatcaattatttaatgaatctaaaaagtcaattttt 321  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  7943516 tagacaagatacatcaattattcaatgaatctaaaaagtcaattttt 7943562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 40410659 - 40410593
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacactttta 445  Q
    |||| |||||||||||  |||||||||||||||| |||||| ||||| ||| |||||||| ||||||    
T  40410659 gtcgctttaggcgttgtcacacagattaagaaatggaatgacataatcattggatataacgctttta 40410593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 7743599 - 7743547
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||  |||| ||||||||||| || ||||||||||||||||||||    
T  7743599 acacagattaaagaattaaatgaaataatcatcagatataacacttttactaa 7743547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 9152456 - 9152499
Alignment:
Q  275 tagactagattcatcaattatttaatgaatctaaaaagtcaatt 318  Q
    |||||||||| ||||||||| | |||||||||||||||||||||    
T  9152456 tagactagatacatcaattactcaatgaatctaaaaagtcaatt 9152499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 449
Target Start/End: Complemental strand, 11171940 - 11171889
Alignment:
Q  398 cacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||||||||||||| ||||||| | |||| ||||||||||||||||    
T  11171940 cacaaattaagaaattgaataaaataatcaatagacataacacttttactaa 11171889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 28249025 - 28249062
Alignment:
Q  290 aattatttaatgaatctaaaaagtcaatttttccttat 327  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  28249025 aattatttaatgaatctaaaaagtcaactttttcttat 28249062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 38449021 - 38449058
Alignment:
Q  281 agattcatcaattatttaatgaatctaaaaagtcaatt 318  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  38449021 agatgcatcaattatttaatgaacctaaaaagtcaatt 38449058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 12486080 - 12486112
Alignment:
Q  286 catcaattatttaatgaatctaaaaagtcaatt 318  Q
    ||||||||||| |||||||||||||||||||||    
T  12486080 catcaattattcaatgaatctaaaaagtcaatt 12486112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 37107062 - 37107010
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||||||| |||||||||||| ||| || | ||||||||||||||    
T  37107062 acacacattaagaaatggaatgaaataattatttgacacaacacttttactaa 37107010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 40987236 - 40987288
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  40987236 acacatattaaggaatgaaatgaaataatcattagacataacacttttactaa 40987288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 1790 - 1720
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||| |||||| ||| ||||||||||||  ||||||||||| ||| ||||||||| |||||||||    
T  1790 gtcgctttagacgttggcacatagattaagaaatgaaatgaaataatcattggatataacatttttactaa 1720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 9529 - 9459
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||| |||||| ||| ||||||||||||  ||||||||||| ||| ||||||||| |||||||||    
T  9529 gtcgctttagacgttggcacatagattaagaaatgaaatgaaataatcattggatataacatttttactaa 9459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 13022 - 13074
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||    
T  13022 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaa 13074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 12040 - 12088
Alignment:
Q  401 agattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||||||| ||| |||||||||||| |||||| ||||||||||||||||    
T  12040 agattaaggaatggaatgaaataatcattagacataacacttttactaa 12088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 8365 - 8295
Alignment:
Q  379 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    |||| ||||||  |||| ||||||||||| |||| |||||||||||| ||| |||||||  ||||||||||    
T  8365 gtcgctttaggttttggcacacagattaaaaaatggaatgaaataatcattggatataaggcttttactaa 8295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 15994 - 16046
Alignment:
Q  397 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 449  Q
    ||||| ||||| ||||| ||||||||||| |||| |||||||| |||||||||    
T  15994 acacatattaaaaaattaaatgaaataatcattatatataacatttttactaa 16046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 18452 - 18484
Alignment:
Q  280 tagattcatcaattatttaatgaatctaaaaag 312  Q
    ||||||||| |||||||||||||||||||||||    
T  18452 tagattcattaattatttaatgaatctaaaaag 18484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 423336 - 423368
Alignment:
Q  286 catcaattatttaatgaatctaaaaagtcaatt 318  Q
    ||||||||||| |||||||||||||||||||||    
T  423336 catcaattattcaatgaatctaaaaagtcaatt 423368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 566 times since January 2019
Visitors: 2567