View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0277_high_1 (Length: 345)
Name: NF0277_high_1
Description: NF0277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0277_high_1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 63 - 345
Target Start/End: Original strand, 35630598 - 35630880
Alignment:
| Q |
63 |
cactccccctaatatcacaatgaacaagaacacaaataaggttccccatagtccctgatggaacaaaaagagctgcttccttccccatcatctttcccat |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
35630598 |
cactccccctaatatcacaatgaacaagaacacaaataaggttccccatagtccctgatggaacaaaaagagctgcttcctttcccatcatctttgccat |
35630697 |
T |
|
| Q |
163 |
ctctgtctccaagagtaaagctgttggatcatagccaagaacatcatcgtcaacttcagcacttgccatagcagccctcattgcctcagttggctttgtc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35630698 |
ctctgtctccaagagtaaagctgttggatcatagccaagaacatcatcgtcaacttcagcacttgccatagcagccctcattgcctcagttggctttgtc |
35630797 |
T |
|
| Q |
263 |
accgtgtctgaccgaagatccacatttctagttaccattttctctacaactacaacaaaccaaaaagtaaaaatcaatagcca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35630798 |
accgtgtctgaccgaagatccacatttctagttaccattttctctacaactacaacaaaccaaaaagtaaaaatcaatagcca |
35630880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 63 - 314
Target Start/End: Complemental strand, 47826607 - 47826356
Alignment:
| Q |
63 |
cactccccctaatatcacaatgaacaagaacacaaataaggttccccatagtccctgatggaacaaaaagagctgcttccttccccatcatctttcccat |
162 |
Q |
| |
|
||||||| || || |||||||||||||| ||| | || |||||||||||||| |||||||| ||||||||||| ||||| || ||| | |||||| |||| |
|
|
| T |
47826607 |
cactccctcttatgtcacaatgaacaagcacagatatgaggttccccatagtgcctgatgggacaaaaagagcagcttcttttcccgttatctttgccat |
47826508 |
T |
|
| Q |
163 |
ctctgtctccaagagtaaagctgttggatcatagccaagaacatcatcgtcaacttcagcacttgccatagcagccctcattgcctcagttggctttgtc |
262 |
Q |
| |
|
|||| || ||| | ||| | || || ||||||||||||||| || || ||||| ||||||||||| | | ||||| ||||| || ||||| |
|
|
| T |
47826507 |
ctcttcttctaagcgaaaacaagaagggtcgcggccaagaacatcatcatcgacctcagcgtttgccatagcaactcgcattgtttcagtcggttttgtg |
47826408 |
T |
|
| Q |
263 |
accgtgtctgaccgaagatccacatttctagttaccattttctctacaacta |
314 |
Q |
| |
|
|| || ||||||||||||||||| | |||||||||||||| ||| |||||| |
|
|
| T |
47826407 |
actgtatctgaccgaagatccactgtcctagttaccattttttctgcaacta |
47826356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 712 times since January 2019
Visitors: 2568