View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0277_high_5 (Length: 273)
Name: NF0277_high_5
Description: NF0277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0277_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 37495206 - 37495016
Alignment:
| Q |
32 |
aagaaaatactaagctcctggtgcatattatgatctccctcaggatcaatcaaatgaaaagattcacattcagaagatccaccaccaaccctcttaaaac |
131 |
Q |
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| T |
37495206 |
aagaaaatactaagctcctggtgaatattatgatctccctcaggatcaatcaaatgaaaagattcacattcagaagatccaccaccaaccctcttaaaac |
37495107 |
T |
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| Q |
132 |
tacctctcaaatacataacttcattatcttcttctttattcacaatttccttacacttcattactccagttccaacagcaacagaacgcat |
222 |
Q |
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| T |
37495106 |
tacctctcaaatacataacttcattatcttcttctttattcacaatttccttacacttcattactccagttccaacagcaacagaacgcat |
37495016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 39308133 - 39308105
Alignment:
| Q |
71 |
tcaggatcaatcaaatgaaaagattcaca |
99 |
Q |
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| T |
39308133 |
tcaggatcaatcaaatgaaaagattcaca |
39308105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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