View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0277_high_6 (Length: 266)
Name: NF0277_high_6
Description: NF0277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0277_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 2753840 - 2754094
Alignment:
| Q |
1 |
aaatgaaaaccaaaatactttataatgtcatgaaaccaacaaactaaaaatccagtcaatttagtccttgaatctgctaatcctcttaatcagattgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2753840 |
aaatgaaaaccaaaatactttataatgtcatgaaaccaacaaactaaaaatccagtcaatttagtccttgaatctgctaaccctcttaatcagattgttc |
2753939 |
T |
|
| Q |
101 |
atagtaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaaaccaggcaataattcatatacaatatatctcctcatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2753940 |
atagtaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaaaccaggcaataattcatatacaatatatctcctcatat |
2754039 |
T |
|
| Q |
201 |
tttccctatctctcaatgaaatattcccaagcctctccatgacactcacattcat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2754040 |
tttccctatctctcaatgaaatattcccaagcctctccatgacactcacattcat |
2754094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 63 - 255
Target Start/End: Original strand, 2757863 - 2758055
Alignment:
| Q |
63 |
agtccttgaatctgctaatcctcttaatcagattgttcatagtaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaa |
162 |
Q |
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||||||||||||| | | ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2757863 |
agtccttgaatctattgaccctctcaatcagattattcatagcaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaa |
2757962 |
T |
|
| Q |
163 |
accaggcaataattcatatacaatatatctcctcatattttccctatctctcaatgaaatattcccaagcctctccatgacactcacattcat |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
2757963 |
accaggcaataattcatatacaatatatctcctcatattttctctatctctcaatgaaatattcccaagcctctccaccacattcacattcat |
2758055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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