View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0277_high_8 (Length: 260)
Name: NF0277_high_8
Description: NF0277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0277_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 35045053 - 35045273
Alignment:
| Q |
30 |
tacattgagcacaatatcatcacatatttcaatatcacgaatcattggtatacaatcttcattcaaaacaccaagctgctctaaggcacagccattgtga |
129 |
Q |
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| T |
35045053 |
tacattgagcacaatatcatcacatatttcaatatcacgaatcattggtatacaatcttcattcaaaacaccaagctgctctaaggcacagccattgtga |
35045152 |
T |
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| Q |
130 |
tcagtagccttagcacaatcaagattattcctgttgaaagaatcttgcttaacatcaccgtggtcaaaagcattaccaacatctctagcacccagaaaat |
229 |
Q |
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| T |
35045153 |
tcagtagccttagcacaatcaagattattcctgttgaaagaatcttgcttaacatcaccgtggtcaaaagcattaccaacatctctagcacccagaaaat |
35045252 |
T |
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| Q |
230 |
ctgcagctggatccacctttg |
250 |
Q |
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| T |
35045253 |
ctgcagctggatccacctttg |
35045273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 35022145 - 35022242
Alignment:
| Q |
144 |
acaatcaagattattcctgttgaaagaatcttgcttaacatcaccgtggtcaaaagcattaccaacatctctagcacccagaaaatctgcagctggat |
241 |
Q |
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| T |
35022145 |
acaatcaagattattcctgttgaaagaatcttgcttaacatcaccatggaccaaagcattaccaacatctctagcacccacggaatctgcagctggat |
35022242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 35022091 - 35022143
Alignment:
| Q |
31 |
acattgagcacaatatcatcacatatttcaatatcacgaatcattggtataca |
83 |
Q |
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| T |
35022091 |
acattgagcacaatatcaccacatatttcattatcacaagtcattagtataca |
35022143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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