View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0277_low_3 (Length: 335)

Name: NF0277_low_3
Description: NF0277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0277_low_3
NF0277_low_3
[»] chr5 (3 HSPs)
chr5 (1-149)||(1953386-1953530)
chr5 (193-325)||(1953573-1953704)
chr5 (88-146)||(27308229-27308287)
[»] chr3 (4 HSPs)
chr3 (88-149)||(43189558-43189619)
chr3 (100-149)||(35850803-35850852)
chr3 (88-149)||(44991098-44991159)
chr3 (88-148)||(34333789-34333849)
[»] chr1 (5 HSPs)
chr1 (88-149)||(49564403-49564463)
chr1 (193-245)||(17775820-17775872)
chr1 (88-149)||(12115086-12115147)
chr1 (89-126)||(43807256-43807293)
chr1 (104-148)||(33128275-33128319)
[»] chr7 (4 HSPs)
chr7 (90-149)||(8900216-8900275)
chr7 (88-149)||(8114787-8114848)
chr7 (104-148)||(10360554-10360597)
chr7 (100-148)||(30060556-30060604)
[»] chr8 (4 HSPs)
chr8 (88-138)||(9815106-9815156)
chr8 (88-149)||(13795737-13795798)
chr8 (100-149)||(34873518-34873567)
chr8 (107-148)||(15238042-15238083)
[»] chr2 (2 HSPs)
chr2 (109-148)||(41385711-41385750)
chr2 (108-149)||(8236834-8236875)
[»] chr4 (1 HSPs)
chr4 (88-125)||(23211207-23211244)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1953386 - 1953530
Alignment:
Q  1 tattgtttattaatggataaaaagttgaatatataagaaatcaaatcaaagagtttctttatgagtttgatgaannnnnnnnnnnnnatgaaatttggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||    
T  1953386 tattgtttattaatggataaaaagttgaatatataagaaatcaaatcaaagagtttctttatgagtttgatgaa----tttttttttatgaaatttggat 1953481  T
Q  101 ttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1953482 ttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 1953530  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 325
Target Start/End: Original strand, 1953573 - 1953704
Alignment:
Q  193 attaaaaaggtaataatgttgacactttataacataaaatactaaatcgaaaagnnnnnnnnngataaaggatgaaagtgttaccgtagtttttgattct 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||| |  ||||||||||    
T  1953573 attaaaaaggtaataatgttgacactttataacataaaatactaaatcgaaaa-aaaaaaaaagataaaggatgaaagtgttaccgcaacttttgattct 1953671  T
Q  293 gcaaccactcctcgttttgttctctgatctgtg 325  Q
    |||||||| ||||||||||||||||||||||||    
T  1953672 gcaaccacccctcgttttgttctctgatctgtg 1953704  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 27308287 - 27308229
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgat 146  Q
    ||||||| || |||||||||||||||||||  |||||||| ||||||||| || |||||    
T  27308287 atgaaatatgtatttctatgtttgtatgatatagatttgggtttgtttatgagtttgat 27308229  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 43189558 - 43189619
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    ||||||||||| |||||||||||||| |||||||||||||||  |||||| || ||||||||    
T  43189558 atgaaatttgggtttctatgtttgtaggatgaagatttggatgcgtttatgagtttgatgaa 43189619  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 35850852 - 35850803
Alignment:
Q  100 tttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    |||||| |||||||||||||||||||| |||||||||| || ||||||||    
T  35850852 tttctaggtttgtatgatgaagatttgaatttgtttatgagtttgatgaa 35850803  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 44991098 - 44991159
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    ||||||||||  ||||||||||||||||||||||||| |  ||||||||| || ||||||||    
T  44991098 atgaaatttgagtttctatgtttgtatgatgaagattcgagtttgtttatgagtttgatgaa 44991159  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 34333789 - 34333849
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgatga 148  Q
    ||||||| ||||||| || |||||||||||||||| |||  ||||||||| || |||||||    
T  34333789 atgaaatctggatttataggtttgtatgatgaagagttgagtttgtttatgagtttgatga 34333849  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 49564463 - 49564403
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| ||||| || ||||||||    
T  49564463 atgaaatttgggtttctatgtttgtatgatgaagatttgggttt-tttatgagtttgatgaa 49564403  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 17775872 - 17775820
Alignment:
Q  193 attaaaaaggtaataatgttgacactttataacataaaatactaaatcgaaaa 245  Q
    ||||||||| ||||||| |||||| |||||| ||||||| |||||||||||||    
T  17775872 attaaaaagataataatattgacattttatagcataaaagactaaatcgaaaa 17775820  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 12115086 - 12115147
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    ||||||||||  |||||| | | |||||||||||||||| |||||| ||| |||||||||||    
T  12115086 atgaaatttgattttctaggctagtatgatgaagatttgcatttgtctatgagcttgatgaa 12115147  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 43807256 - 43807293
Alignment:
Q  89 tgaaatttggatttctatgtttgtatgatgaagatttg 126  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  43807256 tgaaatttggatttctatgtttgcatgatgaatatttg 43807293  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 33128319 - 33128275
Alignment:
Q  104 tatgtttgtatgatgaagatttggatttgtttataagcttgatga 148  Q
    ||||||||||||||||||||||  |||||||||| || |||||||    
T  33128319 tatgtttgtatgatgaagatttaaatttgtttatgagtttgatga 33128275  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 8900216 - 8900275
Alignment:
Q  90 gaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    ||||||||| ||||||||||||||||||||| |||||  ||||||||| || ||||||||    
T  8900216 gaaatttgggtttctatgtttgtatgatgaaaatttgagtttgtttatgagtttgatgaa 8900275  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 8114848 - 8114787
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    |||||||| || ||| ||| |||||| ||||||||||||| ||||||||| || ||||||||    
T  8114848 atgaaattcgggtttttatttttgtaagatgaagatttgggtttgtttatgagtttgatgaa 8114787  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 10360554 - 10360597
Alignment:
Q  104 tatgtttgtatgatgaagatttggatttgtttataagcttgatga 148  Q
    |||||||||||||||||||||||| ||||||||| || |||||||    
T  10360554 tatgtttgtatgatgaagatttgg-tttgtttatgagtttgatga 10360597  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 30060604 - 30060556
Alignment:
Q  100 tttctatgtttgtatgatgaagatttggatttgtttataagcttgatga 148  Q
    ||||| |||||||||||||||||||||| |||| |||| || |||||||    
T  30060604 tttctttgtttgtatgatgaagatttgggtttgcttatgagtttgatga 30060556  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 9815156 - 9815106
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttata 138  Q
    |||||| ||| ||||||||||||||||||||||||||| | ||||||||||    
T  9815156 atgaaaattgaatttctatgtttgtatgatgaagattttggtttgtttata 9815106  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 13795798 - 13795737
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    |||||| |||| |||||||||| ||||||||||||||||| ||||||||  || ||||||||    
T  13795798 atgaaaattgggtttctatgttagtatgatgaagatttgggtttgtttacgagtttgatgaa 13795737  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 34873567 - 34873518
Alignment:
Q  100 tttctatgtttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    |||||||||||||||||||||||||| | ||||||||| || ||||||||    
T  34873567 tttctatgtttgtatgatgaagatttaggtttgtttatgagtttgatgaa 34873518  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 15238042 - 15238083
Alignment:
Q  107 gtttgtatgatgaagatttggatttgtttataagcttgatga 148  Q
    |||| |||||||||||||||||||||||||| || |||||||    
T  15238042 gtttttatgatgaagatttggatttgtttatgagtttgatga 15238083  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 41385750 - 41385711
Alignment:
Q  109 ttgtatgatgaagatttggatttgtttataagcttgatga 148  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  41385750 ttgtatgatgaagatttggatttgtttatgagtttgatga 41385711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 8236875 - 8236834
Alignment:
Q  108 tttgtatgatgaagatttggatttgtttataagcttgatgaa 149  Q
    |||||||||||||||||||| ||||||||| || ||||||||    
T  8236875 tttgtatgatgaagatttgggtttgtttatgagtttgatgaa 8236834  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 23211244 - 23211207
Alignment:
Q  88 atgaaatttggatttctatgtttgtatgatgaagattt 125  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  23211244 atgaaatttgaatttctatgtttgtataatgaagattt 23211207  T

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