View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0277_low_6 (Length: 316)

Name: NF0277_low_6
Description: NF0277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0277_low_6
NF0277_low_6
[»] chr2 (3 HSPs)
chr2 (11-109)||(3769297-3769395)
chr2 (70-109)||(24437928-24437968)
chr2 (65-109)||(44944079-44944123)
[»] chr1 (4 HSPs)
chr1 (11-109)||(3928295-3928393)
chr1 (34-104)||(23347009-23347079)
chr1 (36-102)||(51184524-51184589)
chr1 (34-104)||(15248879-15248949)
[»] chr6 (1 HSPs)
chr6 (11-109)||(30373042-30373140)
[»] chr5 (5 HSPs)
chr5 (144-239)||(3938545-3938643)
chr5 (32-98)||(16914271-16914337)
chr5 (252-288)||(3938686-3938722)
chr5 (38-99)||(39933551-39933612)
chr5 (65-109)||(22967188-22967232)
[»] chr4 (2 HSPs)
chr4 (18-109)||(6353652-6353743)
chr4 (30-90)||(56532714-56532774)
[»] chr3 (5 HSPs)
chr3 (21-104)||(36501593-36501676)
chr3 (46-104)||(36496981-36497040)
chr3 (32-104)||(29429926-29429998)
chr3 (70-109)||(35420348-35420388)
chr3 (64-104)||(35653124-35653164)
[»] scaffold0025 (1 HSPs)
scaffold0025 (30-90)||(150368-150428)
[»] chr8 (1 HSPs)
chr8 (42-82)||(32318075-32318115)
[»] chr7 (3 HSPs)
chr7 (65-109)||(3772599-3772643)
chr7 (30-90)||(13784876-13784936)
chr7 (30-90)||(23902775-23902835)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 3769297 - 3769395
Alignment:
Q  11 cacagaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3769297 cacagaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 3769395  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 24437928 - 24437968
Alignment:
Q  70 ctctcatctctcacaataaaaa-ccctctcacttgaaatgc 109  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  24437928 ctctcatctctcacaataaaaagccctctcacttgatatgc 24437968  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 44944079 - 44944123
Alignment:
Q  65 taacactctcatctctcacaataaaaaccctctcacttgaaatgc 109  Q
    |||| |||||||||||||||||||||| | |||||||||| ||||    
T  44944079 taaccctctcatctctcacaataaaaaacatctcacttgatatgc 44944123  T

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Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 3928393 - 3928295
Alignment:
Q  11 cacagaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3928393 cacaaaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctcttacttgaaatgc 3928295  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 23347079 - 23347009
Alignment:
Q  34 aaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttga 104  Q
    ||||||||| |||||| |||||||| ||| ||||| ||||||||||| | ||||||||  |||||||||||    
T  23347079 aaccgttaatattgattcaagggttataatttaaccctctcatctcttataataaaaaatctctcacttga 23347009  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 51184589 - 51184524
Alignment:
Q  36 ccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcactt 102  Q
    ||||| |||| ||||||| |||| ||| ||||| |||||||||||||||||||||| ||||||||||    
T  51184589 ccgttgagatcgatccaaaggttataatttaaccctctcatctctcacaataaaaa-cctctcactt 51184524  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 15248949 - 15248879
Alignment:
Q  34 aaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttga 104  Q
    |||| |||| ||| ||||||||||| | | ||||| ||||||||||||||  ||||| |||||||||||||    
T  15248949 aaccattaatattaatccaagggttatgatttaaccctctcatctctcactgtaaaagccctctcacttga 15248879  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 30373042 - 30373140
Alignment:
Q  11 cacagaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  30373042 cacataagtaaagtttcattttgaaccgttaagattgatccaagggttgtaatttaacactctcatctctcataataaaaaccctctcacttgaaatgc 30373140  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 3938545 - 3938643
Alignment:
Q  144 gtgattatcacaaatacattatttgattctctttctcacttgaaatgtcctcccctactccgaatatggac---ataatcagcacattgccagactccg 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||    
T  3938545 gtgattatcacaaatacattatttgattctctttctcacttgaaatgtcctcccctactccgaatgtggacataataatcagcacattgccagactccg 3938643  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 16914271 - 16914337
Alignment:
Q  32 tgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctc 98  Q
    |||||| |||||||||||| || |||| |||  |||| |||||||||||||||||||||||||||||    
T  16914271 tgaacctttaagattgatctaatggttataatataactctctcatctctcacaataaaaaccctctc 16914337  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 3938686 - 3938722
Alignment:
Q  252 ctgcaacaagcatcctctccaagaaatggaaccaact 288  Q
    |||||||||||||||||||||||||||||||||||||    
T  3938686 ctgcaacaagcatcctctccaagaaatggaaccaact 3938722  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 39933551 - 39933612
Alignment:
Q  38 gttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctca 99  Q
    |||| |||||||||||||||| | | ||||| |||| |||||||||||||||||| ||||||    
T  39933551 gttatgattgatccaagggttatgatttaaccctcttatctctcacaataaaaacactctca 39933612  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 22967188 - 22967232
Alignment:
Q  65 taacactctcatctctcacaataaaaaccctctcacttgaaatgc 109  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||    
T  22967188 taaccctctcatctctcacaataaaaaacctctcacttgatatgc 22967232  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 6353743 - 6353652
Alignment:
Q  18 gtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  6353743 gtaaagtttcattttgaaccgttaagattgatccaagggttataacttaacactctcatctctcataatgaaaaccctctcacttgaaatgc 6353652  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 56532774 - 56532714
Alignment:
Q  30 tttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaa 90  Q
    |||||||||||||||||| | ||| |||||||| ||||| ||||||||||  |||||||||    
T  56532774 tttgaaccgttaagattggttcaatggttgtaatttaaccctctcatctcatacaataaaa 56532714  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 36501593 - 36501676
Alignment:
Q  21 aagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttga 104  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||    
T  36501593 aagtttcatcttgaacagttaagattgatccaagggttgtgacttaatcctctcatctctcacaataaaaaccctctcgcttga 36501676  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 36497040 - 36496981
Alignment:
Q  46 tgatccaagggttgtaacttaacactctcatctctcacaataaaaacc-ctctcacttga 104  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||| |||||||||||    
T  36497040 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttga 36496981  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 29429998 - 29429926
Alignment:
Q  32 tgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttga 104  Q
    |||||| |||||||||||| || |||| ||  |||   |||||| ||||||||||||||||||||||| ||||    
T  29429998 tgaaccattaagattgatctaatggttatagtttagtcctctcacctctcacaataaaaaccctctcatttga 29429926  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 35420348 - 35420388
Alignment:
Q  70 ctctcatctctcacaataaaaa-ccctctcacttgaaatgc 109  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  35420348 ctctcatctctcacaataaaaagccctctcacttgatatgc 35420388  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 35653164 - 35653124
Alignment:
Q  64 ttaacactctcatctctcacaataaaaaccctctcacttga 104  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  35653164 ttaaccctctcatctctcacaataaaactcctctcacttga 35653124  T

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Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 150428 - 150368
Alignment:
Q  30 tttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaa 90  Q
    ||||||||||||||||||||| ||||||| |   ||||| |||||||||||||||||||||    
T  150428 tttgaaccgttaagattgatcgaagggttatggtttaaccctctcatctctcacaataaaa 150368  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 32318115 - 32318075
Alignment:
Q  42 agattgatccaagggttgtaacttaacactctcatctctca 82  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  32318115 agattgatccaagggttgtaatttaaccctctcatctctca 32318075  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 3772643 - 3772599
Alignment:
Q  65 taacactctcatctctcacaataaaaaccctctcacttgaaatgc 109  Q
    |||| |||||||||||||||||||||| ||||||| |||| ||||    
T  3772643 taaccctctcatctctcacaataaaaaacctctcatttgatatgc 3772599  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 13784876 - 13784936
Alignment:
Q  30 tttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaa 90  Q
    ||||||||||||| |||||||||| |||| |   ||||  |||||||||||||||||||||    
T  13784876 tttgaaccgttaaaattgatccaaaggttatggtttaatcctctcatctctcacaataaaa 13784936  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 23902835 - 23902775
Alignment:
Q  30 tttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaa 90  Q
    ||||||||||||| |||||||||| |||| |   ||||  |||||||||||||||||||||    
T  23902835 tttgaaccgttaaaattgatccaaaggttatggtttaatcctctcatctctcacaataaaa 23902775  T

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