View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0277_low_7 (Length: 314)
Name: NF0277_low_7
Description: NF0277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0277_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 35630859 - 35631164
Alignment:
| Q |
1 |
aaaaagtaaaaatcaatagccattacaaattcatcgcaattgcaaaattagattccccgaattcacacagttaagacatagatgatatagatgacagttc |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
35630859 |
aaaaagtaaaaatcaatagccattacaagttcatcgcaatttcaaaattagattccccgcattcacacagttaagacatggatgatatagatgacagttc |
35630958 |
T |
|
| Q |
101 |
catcaaagattggacagtccaaattcatacttggtattttgaattataaaatatacttttttggactgtctaatcttgatcaaatgttcaagaatgtcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
35630959 |
catcaaagattggacagtccaaattcatacttggtattttgaattataaaatataattttttggactgtctaatcttgatcaaatgttcacgaatgtcct |
35631058 |
T |
|
| Q |
201 |
gcatgaatgcgggaacccttgacgactgcataggatccaaattccaaattttcttctgtnnnnnnnnnnnntgaaatcaccaattttagagtgacatgtc |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35631059 |
gcatgaatgcgggaacccttgacaactgcataggatccgaattccaaattttcttctgtaaaaagaaaaaatgaaatcaccaattttagagtgacatgtt |
35631158 |
T |
|
| Q |
301 |
tctgct |
306 |
Q |
| |
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|||||| |
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|
| T |
35631159 |
tctgct |
35631164 |
T |
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