View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0278_high_3 (Length: 358)

Name: NF0278_high_3
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0278_high_3
NF0278_high_3
[»] chr7 (12 HSPs)
chr7 (13-329)||(32727174-32727495)
chr7 (13-329)||(36217759-36218075)
chr7 (13-329)||(35981617-35981933)
chr7 (13-329)||(36003029-36003345)
chr7 (12-326)||(36221753-36222067)
chr7 (49-329)||(35977087-35977367)
chr7 (49-329)||(35998499-35998779)
chr7 (18-329)||(35938939-35939250)
chr7 (18-329)||(35946393-35946704)
chr7 (18-329)||(35957601-35957912)
chr7 (172-331)||(35952171-35952330)
chr7 (18-134)||(35952032-35952148)
[»] chr1 (2 HSPs)
chr1 (13-329)||(18125316-18125632)
chr1 (22-321)||(18117672-18117971)
[»] chr2 (1 HSPs)
chr2 (17-322)||(26328799-26329104)
[»] chr4 (3 HSPs)
chr4 (151-263)||(49352282-49352394)
chr4 (76-113)||(7128578-7128615)
chr4 (76-113)||(7721852-7721889)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 32727174 - 32727495
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32727174 aatatccacttatttaaatcatattttgagaataaggaacttcgtaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 32727273  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaac-----aaagataaacaatcttctagggaaagaccttccaaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||| |||| |||||||||||||||    
T  32727274 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaattaaagataaacaatctcctagagaaagaccttccaaa 32727373  T
Q  208 acgtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatca 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  32727374 acgtacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatcaaatctatca 32727473  T
Q  308 actcaatccattttgcacgatc 329  Q
    ||||||||||||||||||||||    
T  32727474 actcaatccattttgcacgatc 32727495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 36218075 - 36217759
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    |||| |||||||| ||||||| |||||||||| |  ||||||||||  ||||||||||  || ||||| || ||||||||||||||||||||||| ||||    
T  36218075 aataaccacttatctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagcggaactccagcacattttttcacaatttcttttccaa 36217976  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 212  Q
    | | ||| |||| |||||||||  || |||| || ||||| ||||||||||| ||||||| ||| |||||||| ||||  ||||||||||||||||| ||    
T  36217975 tctccactagatttggatatttttcttcttctccatccttgaatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacata 36217876  T
Q  213 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 312  Q
    ||| |||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||| ||||| ||  |||||  |||||||    
T  36217875 cgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaactca 36217776  T
Q  313 atccattttgcacgatc 329  Q
    |||||||||||||||||    
T  36217775 atccattttgcacgatc 36217759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 35981617 - 35981933
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    |||| ||||||||||||||||   ||||| || | |||||||||||||||| | ||||  |||||||| |||  ||||||||||||||||||||| || |    
T  35981617 aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga 35981716  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 212  Q
    ||| ||| |||| |||||||||   | ||||||||||||||||||||||||||||||||| |||||||||||| | | | |||||||||| |||||  ||    
T  35981717 tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagata 35981816  T
Q  213 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 312  Q
    ||  |||| |  ||||||||| |||| ||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||| ||  ||||| ||||||||    
T  35981817 cggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaactca 35981916  T
Q  313 atccattttgcacgatc 329  Q
    |||||||||||||||||    
T  35981917 atccattttgcacgatc 35981933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 36003029 - 36003345
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    |||| ||||||||||||||||   ||||| || | |||||||||||||||| | ||||  |||||||| |||  ||||||||||||||||||||| || |    
T  36003029 aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga 36003128  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 212  Q
    ||| ||| |||| |||||||||   | ||||||||||||||||||||||||||||||||| |||||||||||| | | | |||||||||| |||||  ||    
T  36003129 tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagata 36003228  T
Q  213 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 312  Q
    ||  |||| |  ||||||||| |||| ||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||| ||  ||||| ||||||||    
T  36003229 cggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaactca 36003328  T
Q  313 atccattttgcacgatc 329  Q
    |||||||||||||||||    
T  36003329 atccattttgcacgatc 36003345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 36222067 - 36221753
Alignment:
Q  12 gaatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgcca 111  Q
    |||||||||||||||||||||| ||||||| || |  ||||||||||||||| | ||||  || ||||| || ||||||||||||||||||||||| |||    
T  36222067 gaatatccacttatttaaatcaaattttgataacagagaacttcctaatgttttgacagccagcggaactccagcacattttttcacaatttcttttcca 36221968  T
Q  112 atatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgt 211  Q
    || | ||| |||| || ||||||  || |||| || || |||||||||||||| ||||||||| | |||||    ||| | ||||||||||||||||  |    
T  36221967 atctccactagatttgaatatttttcttcttctccgtctttaaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatat 36221868  T
Q  212 acgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactc 311  Q
    |||| |||| ||||| |||||| |||||||||||||| |||| |||||||||||||| ||| ||| || || |||| ||||| ||  ||| || ||||||    
T  36221867 acgaaggaacagtactcatcatggaagcaattgagttactacatgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactc 36221768  T
Q  312 aatccattttgcacg 326  Q
    |||||||||||||||    
T  36221767 aatccattttgcacg 36221753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 35977087 - 35977367
Alignment:
Q  49 gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt 148  Q
    ||||||||||||||||||||||  || |||||||||   || ||||| ||||||||||| || || |  || |||| |||||||||   | |||| ||||    
T  35977087 gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt 35977186  T
Q  149 ccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagtt 248  Q
    |||| || |||||||||||||||| |||||||||||| | | | |||||||||| |||||  || |  |||| |  ||||||||| ||||||||||||||    
T  35977187 ccttgaacgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagtt 35977286  T
Q  249 gctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatc 329  Q
     |||||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| ||| |||||||||||    
T  35977287 actacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatc 35977367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 35998499 - 35998779
Alignment:
Q  49 gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt 148  Q
    ||||||||||||||||||||||  || |||||||||   || ||||| ||||||||||| || || |  || |||| |||||||||   | |||| ||||    
T  35998499 gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt 35998598  T
Q  149 ccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagtt 248  Q
    |||| || |||||||||||||||| |||||||||||| | | | |||||||||| |||||  || |  |||| |  ||||||||| ||||||||||||||    
T  35998599 ccttgaacgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagtt 35998698  T
Q  249 gctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatc 329  Q
     |||||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| ||| |||||||||||    
T  35998699 actacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatc 35998779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 35938939 - 35939250
Alignment:
Q  18 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 117  Q
    |||||||||||||||| ||||||| || |  ||||||||||||||| ||||||  |||||||| |||  |||||||||||||||||| ||  |||| | |    
T  35938939 ccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttgcaatcttc 35939038  T
Q  118 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 217  Q
    || |||| |||||||||  || |||||||||||||||||||  |||||||||||| ||||||||  |  |||   ||||| || |  || |  |||||||    
T  35939039 acaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaactgttctctttagaaaggccatgtaatagatacgagg 35939138  T
Q  218 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 317  Q
    ||| ||| ||| ||||||||||||| || || || ||||| ||||| |||||||||| | || |||  || ||||||||  ||||| |||||||||||||    
T  35939139 gaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaactcaatcca 35939238  T
Q  318 ttttgcacgatc 329  Q
    ||||| ||||||    
T  35939239 ttttgaacgatc 35939250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 35946393 - 35946704
Alignment:
Q  18 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 117  Q
    ||||||| ||| |||| | |||||||| |  |||||| ||||||||||||| |  ||||||||||||   |||||||||||||||||||| || ||        
T  35946393 ccacttacttatatcaaagtttgagaagagagaacttgctaatgttctcacggctagtggaaccccttggcattttttcacaatttcttttcctatcgct 35946492  T
Q  118 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 217  Q
    || |||| |||||| ||   | ||||||||||||| ||||||||||||||||||| ||| |||||||  | | | ||||||||||||||||  || |  |    
T  35946493 actagatttggatactttttttcttcaccttccttgaatgcccatttgacaaacagagacaaacaattctttggagaaagaccttccaaaatatatggag 35946592  T
Q  218 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 317  Q
    ||| |  ||||||||| |||||||||| ||| || ||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| |||    
T  35946593 gaacatcacccatcatcgaagcaattgcgttactgcgtgttgtcaccataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagcca 35946692  T
Q  318 ttttgcacgatc 329  Q
     |||||||||||    
T  35946693 ctttgcacgatc 35946704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 35957601 - 35957912
Alignment:
Q  18 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 117  Q
    ||||||| ||| |||| | |||||||| |  |||||| |||| |||||||| |  ||||||||||||   |||||||||||||||||||| ||||| |      
T  35957601 ccacttacttatatcaaagtttgagaagagagaacttgctaaagttctcacggctagtggaaccccttggcattttttcacaatttcttttccaatctct 35957700  T
Q  118 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 217  Q
    ||  ||| |||||| ||   | |||| |||||||| ||||||||||||||||||| ||||| |||||| | | | ||||||||||  ||||| || |       
T  35957701 acttgatttggataatttttttcttcgccttccttgaatgcccatttgacaaacagagatatacaatcctttggagaaagaccttttaaaacataaggaa 35957800  T
Q  218 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 317  Q
     || |  |||||||||||||||||||||||| || ||||| ||||| || ||||||||||||| |||||| ||||||||  | || ||||| |||| |||    
T  35957801 aaacatcacccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaattcgatcaattcaagcca 35957900  T
Q  318 ttttgcacgatc 329  Q
     |||||||||||    
T  35957901 ctttgcacgatc 35957912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 331
Target Start/End: Original strand, 35952171 - 35952330
Alignment:
Q  172 aaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattt 271  Q
    |||||||||||||  | | | |||||||||| |||||| |||||||||| | ||||||||||  ||||||||||  | |||||||| ||||| || ||||    
T  35952171 aaagataaacaattctttggagaaagacctttcaaaacatacgagggaacattacccatcatccaagcaattgaactactacgtgttgtcaccataattt 35952270  T
Q  272 tgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatctg 331  Q
    ||||| ||| |||||| |||| ||   ||| | |||| |||||||| |||||||||||||    
T  35952271 tgctttctggtgcaccaacttctagcaaatatttcaattcaatccactttgcacgatctg 35952330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 35952032 - 35952148
Alignment:
Q  18 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 117  Q
    ||||||| |||||||  | |||||||| | ||||||||| |||| | ||||||  ||||||||||||  ||||||||||||| | ||||| ||||| |      
T  35952032 ccacttacttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaaccccttgacattttttcacagtatcttttccaatctct 35952131  T
Q  118 acgagatctggatattt 134  Q
    || |||| |||||||||    
T  35952132 actagatttggatattt 35952148  T

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Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 18125316 - 18125632
Alignment:
Q  13 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 112  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||||||||||   |||||||||||||| ||||| || |    
T  18125316 aatatccatgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctagtggaaccccttggcattttttcacaatctcttttccta 18125415  T
Q  113 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 212  Q
    | |  || |||| |||||||||  || |||| |||||||| ||||||||||||||||| | |||||||||||| |  |  |||||||||| |||||| ||    
T  18125416 tctctactagatttggatatttttcttcttcgccttccttgaatgcccatttgacaaatagagataaacaatccttcaaagaaagaccttgcaaaacata 18125515  T
Q  213 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 312  Q
     ||||||| | |||||||||| ||||||||||||||  ||||||| ||||| || ||||||||||||  ||  || ||||||||  ||||| |||||||     
T  18125516 tgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttcctcttgtgccaacttttatcaaatctttcaactcg 18125615  T
Q  313 atccattttgcacgatc 329  Q
    ||||| |||||||||||    
T  18125616 atccactttgcacgatc 18125632  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 18117672 - 18117971
Alignment:
Q  22 ttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacga 121  Q
    |||||||||||| ||||||| || |   | |||||||||||||||||    ||||||||||| || ||||| |||||||||||||| || || |  || |    
T  18117672 ttatttaaatcaaattttgaaaacagacagcttcctaatgttctcacgacgagtggaacccccgcgcatttcttcacaatttcttttcctatctcaacta 18117771  T
Q  122 gatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaat 221  Q
    ||| |||||||||  || |||| |||||||| ||||||||||| ||||||||||||||||| | ||| |  ||||| ||||  ||||| || |||||||     
T  18117772 gatttggatatttgtcttcttcgccttccttgaatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggagggaac 18117871  T
Q  222 agtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccatttt 321  Q
    |||||||||||| || |||||||||||||| ||||| ||| | |||| |||||||||| |||  || ||||| ||  ||||| ||||||| |||||||||    
T  18117872 agtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatccatttt 18117971  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 26329104 - 26328799
Alignment:
Q  17 tccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatg 116  Q
    ||||||||| ||||||| |||||||||| |  ||||||||||| ||| |||| |  | ||||| ||||   ||||||||| | || ||||| ||||| |     
T  26329104 tccacttatctaaatcaaattttgagaagagtgaacttcctaacgttttcactgctaatggaatccctcggcattttttcgctatatcttttccaatctc 26329005  T
Q  117 cacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgag 216  Q
    |   |||| |||||| || ||| |||| |||||||||||||||||||||||||| | ||| |||||||  || |  ||||||||||  |||   |||  |    
T  26329004 cgatagatgtggatactttacttcttctccttccttaaatgcccatttgacaaagagagacaaacaattatccaaagaaagaccttttaaagtatacatg 26328905  T
Q  217 ggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcc 316  Q
    ||||  || |||||||| ||||||||  |||| |||||||| ||||||| |||||||||| || ||||||| ||||||||   |||| ||||||||||||    
T  26328904 ggaaccgttcccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatcc 26328805  T
Q  317 attttg 322  Q
    ||||||    
T  26328804 attttg 26328799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 49352394 - 49352282
Alignment:
Q  151 ttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagttgc 250  Q
    ||||| |||||||||||||||| ||||||  |||| ||||| |||||||||||||||| ||| || |   | || |||||||||   |||||||||| ||    
T  49352394 ttaaaagcccatttgacaaacacagataaggaatcctctagagaaagaccttccaaaatgtatgatgtgttggtgcccatcattttggcaattgagtggc 49352295  T
Q  251 tacgtgtcgtcac 263  Q
    ||||||| |||||    
T  49352294 tacgtgtagtcac 49352282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 7128578 - 7128615
Alignment:
Q  76 ggaacccctgcacattttttcacaatttctttgccaat 113  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7128578 ggaacccctgaacattttttcacaatttccttgccaat 7128615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 7721852 - 7721889
Alignment:
Q  76 ggaacccctgcacattttttcacaatttctttgccaat 113  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7721852 ggaacccctgaacattttttcacaatttccttgccaat 7721889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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