View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0278_high_4 (Length: 313)
Name: NF0278_high_4
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 93 - 313
Target Start/End: Complemental strand, 2955578 - 2955358
Alignment:
| Q |
93 |
cattcataaggtaagatttagacgttgagatttgaaaaaggaaaatattatagtttctgaaacaataaatcaataccccagttaacaacattcaacatgt |
192 |
Q |
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| T |
2955578 |
cattcataaggtaagatttagacgttgagatttgacaaaggaaaatattatagtttatgaaacaataaatcaataccccagttaacaacattcaacatgt |
2955479 |
T |
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| Q |
193 |
acatacatatatcaatccaatatttattttctttattatccaaataacgttacaacaaccaaaatcaggagtagatgtaacacacaaggccagactacat |
292 |
Q |
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| T |
2955478 |
acatacatatatcaatccaatatttattttctttattatccaaataacgttacaacaaccaaaatcaggagtaaatgagacacacaaggccagactacat |
2955379 |
T |
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| Q |
293 |
catgctgtgttccatcatcat |
313 |
Q |
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| T |
2955378 |
caggatgtgttccatcatcat |
2955358 |
T |
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