View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0278_low_1 (Length: 688)

Name: NF0278_low_1
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0278_low_1
NF0278_low_1
[»] chr3 (4 HSPs)
chr3 (30-648)||(35744236-35744854)
chr3 (303-388)||(45146669-45146754)
chr3 (276-414)||(45004704-45004843)
chr3 (594-644)||(52393947-52393997)
[»] chr2 (9 HSPs)
chr2 (71-386)||(45512806-45513131)
chr2 (307-414)||(1300825-1300931)
chr2 (276-388)||(35063632-35063745)
chr2 (329-413)||(40056313-40056397)
chr2 (311-386)||(35064403-35064478)
chr2 (304-363)||(38356887-38356946)
chr2 (535-599)||(19028478-19028539)
chr2 (534-637)||(16209856-16209956)
chr2 (534-613)||(29140170-29140247)
[»] chr8 (9 HSPs)
chr8 (307-415)||(2623231-2623339)
chr8 (530-643)||(13636209-13636319)
chr8 (530-643)||(13736622-13736732)
chr8 (473-608)||(3423747-3423880)
chr8 (276-388)||(278954-279067)
chr8 (276-388)||(636785-636898)
chr8 (276-388)||(822588-822701)
chr8 (303-390)||(13231827-13231914)
chr8 (107-158)||(26126688-26126739)
[»] chr1 (7 HSPs)
chr1 (303-415)||(27702556-27702668)
chr1 (534-614)||(46536647-46536724)
chr1 (276-415)||(25476034-25476174)
chr1 (323-388)||(28651707-28651772)
chr1 (530-573)||(9552835-9552878)
chr1 (588-621)||(48509358-48509391)
chr1 (576-644)||(17969349-17969417)
[»] chr5 (5 HSPs)
chr5 (303-415)||(24153949-24154061)
chr5 (503-620)||(26402014-26402129)
chr5 (540-637)||(7611982-7612076)
chr5 (595-643)||(18653079-18653127)
chr5 (305-369)||(40816249-40816313)
[»] chr6 (2 HSPs)
chr6 (307-414)||(26674008-26674114)
chr6 (538-613)||(23131485-23131557)
[»] chr4 (3 HSPs)
chr4 (329-414)||(12007921-12008006)
chr4 (303-415)||(12007452-12007564)
chr4 (467-567)||(2392556-2392657)


Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 30 - 648
Target Start/End: Original strand, 35744236 - 35744854
Alignment:
Q  30 agacttaccaatcttgtcatgaagatcccattctatgctgggagactagtgattagaagacaataattaaaaagttaggaatacacttacgtttcagttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744236 agacttaccaatcttgtcatgaagatcccattctatgctgggagactagtgattagaagacaataattaaaaagttaggaatacacttacgtttcagttt 35744335  T
Q  130 tgagagggaatgccaaaatgttacaaacccattactattctaatgttgtagggtttcttgatgatattagtggattgactcgattcaacaatgaaggttt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744336 tgagagggaatgccaaaatgttacaaacccattactattctaatgctgtagggtttcttgatgatattagtggattgactcgattcaacaatgaaggttt 35744435  T
Q  230 gtccccacaattttaatagaagattctttaagaaaaaattaagggaaaaattaacggtgttaatagagaatagggtgtttgtctatttgattaaaattca 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35744436 gtccccacaattttaatagaagattctttaagaaaaaattaagggaaaaattaacggtgttaatagagaatagggtgtttgtttatttgattaaaattca 35744535  T
Q  330 agggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaattttccctagtttttcagagaca 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  35744536 agggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaatcttaccgaagctggatgtaatttttcctagtttttcagagaca 35744635  T
Q  430 cgaaagttttttccaataaataaaattttattaagggttttgttaatcagtgccctatgagtattagttaaaaaatccattagtaaaaatcatgtattgg 529  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  35744636 cgaaagtttttttcaataaataaaattttattaagggttttgttaatcagtgcactatgagtattggttaagaaatccattagtagaaatcatgtattgg 35744735  T
Q  530 aatgcaagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactcc 629  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||    
T  35744736 aatgcaagtttttacttttgtcttaccaataattacacatatttaatttgttacaaaattacttattttaatactttaatcaatgctctaaggatactcc 35744835  T
Q  630 ttaacattttccttttatt 648  Q
    |||||||||||||||||||    
T  35744836 ttaacattttccttttatt 35744854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 45146669 - 45146754
Alignment:
Q  303 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaacct 388  Q
    ||||||||||||||| |||| ||   ||||||||||| |||||||||| |||||||| |||||||   |||| |||||||||||||    
T  45146669 ggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacct 45146754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 414
Target Start/End: Complemental strand, 45004843 - 45004704
Alignment:
Q  276 aaaattaacggtgttaatagagaataggg-tgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 374  Q
    ||||||||| ||||||||||| ||  | | ||||||||||||| || |||| | |||||||||| |||| || ||| ||| || ||||| |||||||| |    
T  45004843 aaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattgac 45004744  T
Q  375 gttttaataaaccttaccgaaggtggatgtaattttccct 414  Q
     ||||||||||||| |  | |||||  |||||||||||||    
T  45004743 attttaataaacctcagaggaggtgagtgtaattttccct 45004704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 644
Target Start/End: Original strand, 52393947 - 52393997
Alignment:
Q  594 attttaatactttaatcaatgctccaatgatactccttaacattttccttt 644  Q
    ||||| ||| ||||||||||||||||| ||||||| |||||||| ||||||    
T  52393947 atttttataatttaatcaatgctccaaggatactcattaacattctccttt 52393997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 71 - 386
Target Start/End: Original strand, 45512806 - 45513131
Alignment:
Q  71 gagactagtgattagaagacaataattaaaaagttaggaatacacttacgtttcagttttgagagggaatgccaaaatgttacaaacccattactattct 170  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45512806 gagaccagtgattagaagacaaggatttaaaaattaggaatacacctatgtttcagttttgagagggaatgccaaaatgttacaaacccattactattat 45512905  T
Q  171 aatgttgtagggtttctt------------gatgatattagtggattgactc-gattcaacaatgaaggtttgtccccacaattt--taatagaagattc 255  Q
    ||| | ||| ||||||||            |||||||||| ||||||||||  |||||||||||||||||||||||||||||| |  ||| |||||||||    
T  45512906 aatct-gtaaggtttcttaaatgtttggttgatgatattaatggattgacttagattcaacaatgaaggtttgtccccacaatatgttaacagaagattc 45513004  T
Q  256 tttaagaaaaaattaagggaaaaattaacggtgttaatagagaatagggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaat 355  Q
    |||||||| |  |||| ||||||||||||  ||||||||||||   ||||| |||||||||||||||||| | | ||||||||||||||||||| ||||     
T  45513005 tttaagaagag-ttaacggaaaaattaac--tgttaatagagacg-gggtgattgtctatttgattaaaacttacgggaggttaatgttagtttcgaaac 45513100  T
Q  356 tagaggggatgtcattgtcgttttaataaac 386  Q
    |||||||| ||||  ||||||||||||||||    
T  45513101 tagagggggtgtcgatgtcgttttaataaac 45513131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 1300825 - 1300931
Alignment:
Q  307 tttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaa 406  Q
    ||||| ||||||||| ||||| ||||| ||||| |||| ||||| ||| |||||||| | | | |||| |||||||||||||||  ||||||  ||||||    
T  1300825 tttgtttatttgattgaaatttaaggg-ggttagtgttggttttaaaactagagggggtctaactgtcattttaataaaccttagggaaggtaaatgtaa 1300923  T
Q  407 ttttccct 414  Q
    ||||||||    
T  1300924 ttttccct 1300931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 35063745 - 35063632
Alignment:
Q  276 aaaattaacggtgttaatagagaataggg-tgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 374  Q
    ||||||||| ||||||||||| ||  | | ||||||||||||| || |||| | |||||||||| |||| |||||| ||| |||||||  ||||| || |    
T  35063745 aaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgac 35063646  T
Q  375 gttttaataaacct 388  Q
     |||||||||||||    
T  35063645 attttaataaacct 35063632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 413
Target Start/End: Complemental strand, 40056397 - 40056313
Alignment:
Q  329 aagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaattttccc 413  Q
    ||||||||||||||| |||||||||| |||| ||| ||| | |||| |||| |||||||| | || |||||  ||||||||||||    
T  40056397 aagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggaggtgagtgtaattttccc 40056313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 35064403 - 35064478
Alignment:
Q  311 tctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaac 386  Q
    |||||||||| | |||| |||||| |||| ||| |||||| ||| |||||||||||| | |||| |||||||||||    
T  35064403 tctatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaataaac 35064478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 38356946 - 38356887
Alignment:
Q  304 gtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagagggg 363  Q
    |||||||| ||||||||||||| | |||||||||||||||  ||||| ||| ||||||||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggg 38356887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 599
Target Start/End: Original strand, 19028478 - 19028539
Alignment:
Q  535 aagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttatttta 599  Q
    ||||||||||||||||||||  |||||||||||| |||   ||||||||||| || |||||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactt---tttgttgcaaagttacttatttta 19028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 637
Target Start/End: Original strand, 16209856 - 16209956
Alignment:
Q  534 caagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactccttaa 633  Q
    ||||| ||||||||||||||| ||||| ||||||| |||   ||||||  ||| || ||||||||| |||||||| ||||||| ||| || |||| |||     
T  16209856 caagtgtttacttttgtcttagcaatagttacacaactt---tttgttttaaagttacttattttagtactttaaccaatgctacaaggacactcattag 16209952  T
Q  634 catt 637  Q
    ||||    
T  16209953 catt 16209956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 29140247 - 29140170
Alignment:
Q  534 caagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaat 613  Q
    |||||||||| ||||  |||| |||||||||||||  |||  |||||| ||||||| ||||||||| |||||||| ||||    
T  29140247 caagtttttattttttccttagcaataattacacaatttt--tttgtttcaaaattacttattttagtactttaaccaat 29140170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 307 - 415
Target Start/End: Original strand, 2623231 - 2623339
Alignment:
Q  307 tttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaa 406  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||| |||||||| ||||||||| |||| |||||||||||||||  | | |  |||||||    
T  2623231 tttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaaccttaggggaagcagatgtaa 2623330  T
Q  407 ttttcccta 415  Q
    |||||||||    
T  2623331 ttttcccta 2623339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 643
Target Start/End: Complemental strand, 13636319 - 13636209
Alignment:
Q  530 aatgcaagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactcc 629  Q
    |||||| |||||||||||||||||| |||||| |||||| ||||   ||||| |||| || |||||||||||||||||||||||| || || || ||||     
T  13636319 aatgcatgtttttacttttgtcttaacaataactacacaacttt---ttgttacaaagttacttattttaatactttaatcaatgttcaaaggacactca 13636223  T
Q  630 ttaacattttcctt 643  Q
    ||| ||||||||||    
T  13636222 ttatcattttcctt 13636209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 643
Target Start/End: Complemental strand, 13736732 - 13736622
Alignment:
Q  530 aatgcaagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactcc 629  Q
    |||||| |||||||||||||||||| |||||| |||||| ||||   ||||| |||| || |||||||||||||||||||||||| || || || ||||     
T  13736732 aatgcatgtttttacttttgtcttaacaataactacacaacttt---ttgttacaaagttacttattttaatactttaatcaatgttcaaaggacactca 13736636  T
Q  630 ttaacattttcctt 643  Q
    ||| ||||||||||    
T  13736635 ttatcattttcctt 13736622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 608
Target Start/End: Complemental strand, 3423880 - 3423747
Alignment:
Q  473 taatcagtgccctatgagtattagttaaaaaatccattagtaaaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatct 571  Q
    ||||||||||| || | ||| | ||||| |||| |||||||| |||| |||| || ||| |||||||||||| |||||||||| |||||||||||||  |    
T  3423880 taatcagtgccttaagggtaatggttaagaaattcattagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaagt 3423781  T
Q  572 ttaatttgttgcaaaattgcttattttaatactttaa 608  Q
    |   || ||| ||||||| ||||||||| ||||||||    
T  3423780 t---ttagttacaaaattacttattttagtactttaa 3423747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 279067 - 278954
Alignment:
Q  276 aaaattaacggtgttaatagagaatag-ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 374  Q
    ||||||||| |||||||||| |||  | |||||||||| ||||||| |||| | ||||||| ||||||| |||||| ||| || ||||||||||| ||||    
T  279067 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 278968  T
Q  375 gttttaataaacct 388  Q
     | |||||| ||||    
T  278967 atcttaatagacct 278954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 276 - 388
Target Start/End: Original strand, 636785 - 636898
Alignment:
Q  276 aaaattaacggtgttaatagagaatag-ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 374  Q
    ||||||||| |||||||||| |||  | |||||||||| ||||||| |||| | ||||||| ||||||| |||||| ||| || ||||||||||| ||||    
T  636785 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 636884  T
Q  375 gttttaataaacct 388  Q
     | |||||| ||||    
T  636885 atcttaatagacct 636898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 276 - 388
Target Start/End: Original strand, 822588 - 822701
Alignment:
Q  276 aaaattaacggtgttaatagagaatag-ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 374  Q
    ||||||||| |||||||||| |||  | |||||||||| ||||||| |||| | ||||||| ||||||| |||||| ||| || ||||||||||| ||||    
T  822588 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 822687  T
Q  375 gttttaataaacct 388  Q
     | |||||| ||||    
T  822688 atcttaatagacct 822701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 13231827 - 13231914
Alignment:
Q  303 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaacctta 390  Q
    |||||||||  ||||||| | || | ||||||||||| ||| |||||| |||||||||||| ||||| |||| ||||| |||||||||    
T  13231827 ggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaacctta 13231914  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 26126688 - 26126739
Alignment:
Q  107 ggaatacacttacgtttcagttttgagagggaatgccaaaatgttacaaacc 158  Q
    |||||| ||||| ||||||||||||||||| || ||||||| ||||||||||    
T  26126688 ggaatatacttatgtttcagttttgagaggaaacgccaaaaggttacaaacc 26126739  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 303 - 415
Target Start/End: Complemental strand, 27702668 - 27702556
Alignment:
Q  303 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggat 402  Q
    |||||||||||||||||| |||| |||||||| |||| ||| | |||| |||||| || |||||||| |||| |||||||||||||||    || |||||    
T  27702668 ggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaaccttaggagagatggat 27702569  T
Q  403 gtaattttcccta 415  Q
    |||||||| ||||    
T  27702568 gtaatttttccta 27702556  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 46536724 - 46536647
Alignment:
Q  534 caagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatg 614  Q
    ||||||||||||||||||||| |||||| |||||| ||||    | |||||||||| ||||||||||||||||||||||||    
T  46536724 caagtttttacttttgtcttatcaataactacacaactttg---tattgcaaaattacttattttaatactttaatcaatg 46536647  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 25476034 - 25476174
Alignment:
Q  276 aaaattaacggtgttaatagagaatag-ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 374  Q
    ||||||||||||||||||||| ||  | ||||||||| ||||| || |||| |  |||||||||  ||| |||||| ||| |||||||  ||||| ||||    
T  25476034 aaaattaacggtgttaatagataagggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtc 25476133  T
Q  375 gttttaataaaccttaccgaaggtggatgtaattttcccta 415  Q
     ||||||||||||| |  | ||||| ||||||||| |||||    
T  25476134 attttaataaacctcaggggaggtgaatgtaatttccccta 25476174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 28651772 - 28651707
Alignment:
Q  323 aaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaacct 388  Q
    ||||| ||||||||||||||| |||||| ||| |||||||| ||||| |||| |||||||| ||||    
T  28651772 aaatttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacct 28651707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 573
Target Start/End: Complemental strand, 9552878 - 9552835
Alignment:
Q  530 aatgcaagtttttacttttgtcttaccaataattacacatcttt 573  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||    
T  9552878 aatgcaagtatttacttttgtcttatcaataattacacaccttt 9552835  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 621
Target Start/End: Complemental strand, 48509391 - 48509358
Alignment:
Q  588 ttgcttattttaatactttaatcaatgctccaat 621  Q
    ||||||||||||||||||||||| ||||||||||    
T  48509391 ttgcttattttaatactttaatcgatgctccaat 48509358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 17969349 - 17969417
Alignment:
Q  576 tttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactccttaacattttccttt 644  Q
    |||||||||||||| ||||||||| |||||||| |||||  |||| || |||| ||| |||| ||||||    
T  17969349 tttgttgcaaaattacttattttagtactttaaccaatgtcccaacgacactcattagcattctccttt 17969417  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 303 - 415
Target Start/End: Original strand, 24153949 - 24154061
Alignment:
Q  303 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggat 402  Q
    ||||||||| ||||||||  ||| | |||||||||||||||||||||| ||| |||||||| | | | |||| |||||||||||||||  | |||||  |    
T  24153949 ggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggtgagt 24154048  T
Q  403 gtaattttcccta 415  Q
    ||| |||||||||    
T  24154049 gtagttttcccta 24154061  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 620
Target Start/End: Original strand, 26402014 - 26402129
Alignment:
Q  503 aatccattagtaaaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaat 601  Q
    |||||||||||| ||||  |||||||||| |||||| ||| |||||||||||| |||| |||||||| |||   ||| ||| |||||| ||||||||| |    
T  26402014 aatccattagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactt---tttattgaaaaattacttattttagt 26402110  T
Q  602 actttaatcaatgctccaa 620  Q
    ||| ||| |||||| ||||    
T  26402111 actctaaccaatgccccaa 26402129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 637
Target Start/End: Original strand, 7611982 - 7612076
Alignment:
Q  540 tttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactccttaacatt 637  Q
    ||||||||||| ||| ||||||||| |||  |||   || |||| || ||||||||||||||||||||| ||||| || || ||||||| ||||||||    
T  7611982 tttacttttgttttagcaataattaaacaatttt---ttattgcgaagttgcttattttaatactttaaccaatgttcaaaggatactcattaacatt 7612076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 643
Target Start/End: Complemental strand, 18653127 - 18653079
Alignment:
Q  595 ttttaatactttaatcaatgctccaatgatactccttaacattttcctt 643  Q
    ||||||||||||||||||||||||||| | |||| ||| |||| |||||    
T  18653127 ttttaatactttaatcaatgctccaataacactcgttatcattctcctt 18653079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 40816313 - 40816249
Alignment:
Q  305 tgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtca 369  Q
    |||||||||||| ||| |||| | ||||||||||||||||  |||| ||| ||||||||| ||||    
T  40816313 tgtttgtctattagatgaaaacttaagggaggttaatgtttattttaaaactagaggggaagtca 40816249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 26674008 - 26674114
Alignment:
Q  307 tttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaa 406  Q
    ||||| ||||||||| ||||| ||||| ||||| |||| ||||| ||| |||||||| | | | |||| |||||||||||||||  ||||||  ||||||    
T  26674008 tttgtttatttgattgaaatttaaggg-ggttagtgttggttttaaaactagagggggtctaactgtcattttaataaaccttagggaaggtaaatgtaa 26674106  T
Q  407 ttttccct 414  Q
    ||||||||    
T  26674107 ttttccct 26674114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 613
Target Start/End: Original strand, 23131485 - 23131557
Alignment:
Q  538 tttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaat 613  Q
    ||||||||||||| ||| |||||||||| || |||   ||| |||||||||| ||||||||| |||||||| ||||    
T  23131485 tttttacttttgttttagcaataattacgcaactt---tttattgcaaaattacttattttagtactttaaccaat 23131557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 12007921 - 12008006
Alignment:
Q  329 aagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaattttccct 414  Q
    ||||||||||| ||| |||||| |||||||||||| ||||| |||| ||||| |||| ||||  | |||||  |||||||||||||    
T  12007921 aagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgtaattttccct 12008006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 415
Target Start/End: Complemental strand, 12007564 - 12007452
Alignment:
Q  303 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggat 402  Q
    ||||||||| |||||||| | || | ||| |||||||||||  ||||| ||| |||||||| ||||| |||| ||||| |||||| ||  | |||| | |    
T  12007564 ggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcattttagtaaaccataggggaggttggt 12007465  T
Q  403 gtaattttcccta 415  Q
    |||||||||||||    
T  12007464 gtaattttcccta 12007452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 567
Target Start/End: Original strand, 2392556 - 2392657
Alignment:
Q  467 ttttgttaatcagtgccctatgagtattagttaaaaaatccattagtaaaaatcatgtattg-gaatgcaagtttttacttttgtcttaccaataattac 565  Q
    ||||| ||| |||||||||| ||| ||| |||||  |||||||||||| |||   ||| |||  ||||||||||||||||||||||||  |||||| |||    
T  2392556 ttttgctaaccagtgccctaagagcattggttaaggaatccattagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaataactac 2392655  T
Q  566 ac 567  Q
    ||    
T  2392656 ac 2392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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