View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0278_low_16 (Length: 298)
Name: NF0278_low_16
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 21615223 - 21615116
Alignment:
| Q |
76 |
tgtatgatatcccaaattgttcgatccatttctcatgtttatttgatgaggaaggagaagggttcaaggacactactaggtcttatgatgacactaggtc |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21615223 |
tgtatgatatcccaaattgttcgatccatttctcatgtttatttgatgaggaaggagaagggttcaaggacactactaggtcttatgatgacactaggtc |
21615124 |
T |
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| Q |
176 |
atatcatc |
183 |
Q |
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|||||||| |
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| T |
21615123 |
atatcatc |
21615116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 21615076 - 21615013
Alignment:
| Q |
221 |
atgagttcataggtgctagaggctaaaaaaggacagaaaaataatgttgtggaagagaataatc |
284 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |
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| T |
21615076 |
atgagttcataggtgctagaggttaaaaaaggacagaaaaataatgttgaggaagagaaaaatc |
21615013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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