View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0278_low_18 (Length: 285)
Name: NF0278_low_18
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 37058371 - 37058549
Alignment:
| Q |
64 |
acttcttcattttgccttattaatgatctttatccatttcaacaaccttttagttggtgtatcatcaacccctctaagcattaccacagacaaagaagcc |
163 |
Q |
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| T |
37058371 |
acttcttcattttgccttattaatgatctttatccatttcaacaaccttttagttggtgtatcatcaaccactctaagcattaccacagacaaagaagcc |
37058470 |
T |
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| Q |
164 |
ttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctc |
242 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058471 |
ttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctc |
37058549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 37065849 - 37066027
Alignment:
| Q |
64 |
acttcttcattttgccttattaatgatctttatccatttcaacaaccttttagttggtgtatcatcaacccctctaagcattaccacagacaaagaagcc |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37065849 |
acttcttcattttgccttattaatgatctttatccatttcaacaaccttttagttggtgtatcatcaaccactctaagcattaccacagacaaagaagcc |
37065948 |
T |
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| Q |
164 |
ttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctc |
242 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37065949 |
ttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctc |
37066027 |
T |
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