View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0278_low_19 (Length: 284)
Name: NF0278_low_19
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 10138333 - 10138075
Alignment:
| Q |
12 |
acatcatcaattatcatcttgtagtctgattaaaaa-tgaccctctgataacccagagttgtgatccactccaggtcttgatgcagccccagacttcact |
110 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
10138333 |
acatcatcaactaacatcttgtagtctgattaaaaaatgaccctctgataacccagagttgtgatccactccagttcttgatgcaaccccagacttcact |
10138234 |
T |
|
| Q |
111 |
ctcggttggagtcatagaaatttttaaaacatctctcattgtccttcactatctcgtaagaccgctctcatgctaattgtttgatcaacaatgaaaattg |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
10138233 |
ctcggttggagtcatagaaatctttaaaacatctctcattgtccttcactatctcgtaagaccgctctcattctaattgtttgatcaacaatgataattg |
10138134 |
T |
|
| Q |
211 |
tggcgtcgacattccatttcaacaaactatccccgagaggctgctaaactgtgacatgt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10138133 |
tggcgtcgacattccatttcaacaaactatccccgagaggctgctaaactgtgacatgt |
10138075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 9680044 - 9679921
Alignment:
| Q |
151 |
gtccttcactatctcgtaagaccgctctcatgctaattgtttgatcaacaatgaaaattgtggcgtcgacattccatttcaacaaactatccccgagagg |
250 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||| |||||| || ||||||| ||||||||||| | ||| ||||||| | ||| | |||| |
|
|
| T |
9680044 |
gtccttcactatcacgtaagaccgctcccatgctaattgtctgatcagtggtggaaattgttgcgtcgacattgctttttaacaaaccagccctgggagg |
9679945 |
T |
|
| Q |
251 |
ctgctaaactgtgacatgtctctg |
274 |
Q |
| |
|
|||| |||||||| ||||| |||| |
|
|
| T |
9679944 |
ctgccaaactgtggcatgtgtctg |
9679921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 41687520 - 41687606
Alignment:
| Q |
151 |
gtccttcactatctcgtaagaccgctctcatgctaattgtttgatcaacaatgaaaattgtggcgtcgacattccatttcaacaaac |
237 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||||||| |||||| || ||||||| ||||||| ||| ||||| ||||||| |
|
|
| T |
41687520 |
gtccttcactatcacgtaagatcgctcccatgctaattgtctgatcagtggtggaaattgttgcgtcgatattgcattttaacaaac |
41687606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 41687366 - 41687455
Alignment:
| Q |
12 |
acatcatcaattatcatcttgtagtctgattaaaa-atgaccctctgataacccagagttgtgatccactccaggtcttgatgcagcccc |
100 |
Q |
| |
|
|||||||||| || ||||||| ||||||||| ||| || ||||| |||| ||||| ||||| ||||||| ||| |||||||||||||| |
|
|
| T |
41687366 |
acatcatcaactaacatcttgcagtctgattcaaagataaccctttgatgacccaatgttgttatccacttgaggccttgatgcagcccc |
41687455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 11737838 - 11737942
Alignment:
| Q |
172 |
ccgctctcatgctaattgtttgatcaacaatgaaaattgtggcgtcgacattccatttcaacaaactatccccgagaggctgctaaactgtgacatgtct |
271 |
Q |
| |
|
|||||| |||||||||| | ||||||| |||||||||| ||||||||||| ||||| ||||||| | ||| | |||||||| |||||||| ||||| | |
|
|
| T |
11737838 |
ccgctcccatgctaattatccgatcaacggtgaaaattgttgcgtcgacattacattttaacaaaccagccctgggaggctgccaaactgtggcatgtgt |
11737937 |
T |
|
| Q |
272 |
ctgct |
276 |
Q |
| |
|
||||| |
|
|
| T |
11737938 |
ctgct |
11737942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1082 times since January 2019
Visitors: 2571