View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0278_low_2 (Length: 580)
Name: NF0278_low_2
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_low_2 |
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| [»] chr5 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 263 - 580
Target Start/End: Complemental strand, 11339772 - 11339456
Alignment:
| Q |
263 |
ttgtcactactgcttgtgtcaaagtatatatgacaacaaatcatatagtatatgctttaccgtaacaatatctggtacaatcaattatcaattaactcac |
362 |
Q |
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| T |
11339772 |
ttgtcactactgcttgtgtcaaagtatatatgacaacaaatcatatagtatatgctttaccgtaaccatatctggtacaatcaattatcaattaactcac |
11339673 |
T |
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| Q |
363 |
aagagggattgaagtgaaattccaccgtgaagcaccattgttttacaaatcagttataaatgtctcactagactgcaaaaacataacctcatctaaaaat |
462 |
Q |
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| T |
11339672 |
aagagggattgaagtgaaattccaccgtgaaacaccattgttttacaaatcagttataaatgtctcactggactgcaaaaacataacctcatctaaaaa- |
11339574 |
T |
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| Q |
463 |
agnnnnnnnnnataagattcatcttaggacagatgaatataattcaattaggaaaagttttaagggacttagatattattatcacttattaacactgtca |
562 |
Q |
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| T |
11339573 |
aaagtttttttataagattcatcttaggacagatgaatataattcaattaggaaaagttttaaggaacttacatattattatcacttattaatactgtca |
11339474 |
T |
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| Q |
563 |
aattttgttctgaaaaat |
580 |
Q |
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| T |
11339473 |
aattttgttctgaaaaat |
11339456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 154 - 580
Target Start/End: Complemental strand, 43379298 - 43378880
Alignment:
| Q |
154 |
tacagaggcagcatcctccccttctactccacgttacctcacccaactcaccctcaatatcacatgtcgttatcatcaccgcagtcgccgccgcttccaa |
253 |
Q |
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| T |
43379298 |
tacagaggcatcatcctccccttctactccacgttgccttgcccaactcaccctcaataacacatgtcgttatcttcgccgctgtcaccgccgcttcaaa |
43379199 |
T |
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| Q |
254 |
ccgttaaag--ttgtcactactgcttgtgtcaaagtatatatgacaacaaatcatatagtatatgctttaccgtaacaatatctggtacaatcaattatc |
351 |
Q |
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| T |
43379198 |
ccggtaaagctttgtcgctactgcttgtgtcaaagtatat--ggcaacaaattgtatagcat--gctttaccgttacaatatatggtacaatcagttatc |
43379103 |
T |
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| Q |
352 |
aattaactcacaagagggattgaagtgaaattccaccgtgaagcaccattgttttacaaatcagttataaatgtctcactagactgcaaaaacataacct |
451 |
Q |
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| T |
43379102 |
aattaactcacaagagggactgaagtgaaattccaccgtgaagcaccgttgttttacaaattagttataaatgtctcacttgactgcaaaaacataacct |
43379003 |
T |
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| Q |
452 |
catct----aaaaatagnnnnnnnnnataagattcatcttaggacagatgaatataattcaattaggaaaagttttaagggacttagatattattatcac |
547 |
Q |
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| T |
43379002 |
catcttaaaaaaaaacatttttttttataagattcatcttagaaccgatgaatataattc----------agttttaagggacttacatactattatcac |
43378913 |
T |
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| Q |
548 |
ttattaacactgtcaaattttgttctgaaaaat |
580 |
Q |
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| T |
43378912 |
ttattaacactatcaaattttgttcagaaaaat |
43378880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 11343650 - 11343582
Alignment:
| Q |
110 |
ctcttcctctctccggcgccgccgcagctgccccttatagtccatacagaggcagcatcctccccttct |
178 |
Q |
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| T |
11343650 |
ctctccctctctccgacgccgccgcaactgccccttacagtccatacagaggcggcatcctccccttct |
11343582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 87 - 580
Target Start/End: Complemental strand, 13208135 - 13207653
Alignment:
| Q |
87 |
catcatcactgccttgtctctccctcttcctctctccggcgccgccgcagctgccccttatagtccatacagaggcagcatcctccccttctactccacg |
186 |
Q |
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| T |
13208135 |
catcatcaccgccctgtctctccctctccctctc--cggcgccgccgccaccgccccttttcgtcacta--gaggcagcatcctccccttctactccacg |
13208040 |
T |
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| Q |
187 |
ttacctcacccaactcaccctcaatatcacatgtcgttatcatcaccgcagtcgccgccgcttccaaccgttaaag--ttgtcactactgcttgtgtcaa |
284 |
Q |
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| T |
13208039 |
ttgccttgcccaactcaccctcaataacacatgttgttatcttcgccgctgtcaccaccgcttcaaaccggtaaagctttgtcactactgcttgtgtcaa |
13207940 |
T |
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| Q |
285 |
agtatatatgacaacaaatcatatagtatatgctttaccgtaacaatatctggtacaatcaattatcaattaactcacaagagggattgaagtgaaattc |
384 |
Q |
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| T |
13207939 |
agtatat--ggcagcaaattatatagcat--gctttatcgttacaatatatggtacaatcagttatcaattaactcgcaagagggactgaagtgaaattc |
13207844 |
T |
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| Q |
385 |
caccgtgaagcaccattgttttacaaatcagttataaatgtctcactagactgcaaaaacataacctcatct-----aaaaatagnnnnnnnnnataaga |
479 |
Q |
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| T |
13207843 |
caccgtaaagcaccgttgttttacaaattagttataaatgtctcacttgactgcaaaaacataacctaatcttaaaaaaaaaaaaattttttttataaga |
13207744 |
T |
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| Q |
480 |
ttcatcttaggacagatgaatataattcaattaggaaaagttttaagggacttagatattattatcacttattaacactgtcaaattttgttctgaaaaa |
579 |
Q |
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| T |
13207743 |
ttcatcttagaacagatgaatataattc----------agttttaagggacttacatactattatcacttattaacactatcaaattttgttcagaaaaa |
13207654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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