View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0278_low_26 (Length: 217)
Name: NF0278_low_26
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 24642119 - 24641957
Alignment:
| Q |
26 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
125 |
Q |
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| T |
24642119 |
gttcaatcaaaacagaatgattacgcgtaattacaaagcttacttttttctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
24642020 |
T |
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| Q |
126 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcac |
188 |
Q |
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| T |
24642019 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcac |
24641957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 24693488 - 24693326
Alignment:
| Q |
26 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
125 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24693488 |
gttcaatcaaaacagaatgattacgcataattacaaagcttattttattttgatgggtttgttggtgaatttagcttcaactaagtatgaagctttaaac |
24693389 |
T |
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| Q |
126 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcac |
188 |
Q |
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| T |
24693388 |
actaacccatttaaaccactatctccaactatgttgctgtttttgacatctctatgttgtcac |
24693326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 24694574 - 24694459
Alignment:
| Q |
26 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
125 |
Q |
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| T |
24694574 |
gttcaatcaaaacagaatgattacgcgtaattacaaagcttattttattctgatgggtttgttggtgtctttagcttcaactaagtatgaagctttaaac |
24694475 |
T |
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| Q |
126 |
accaacccgtttcaac |
141 |
Q |
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|| ||||||||||||| |
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| T |
24694474 |
actaacccgtttcaac |
24694459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 24733205 - 24733335
Alignment:
| Q |
64 |
cttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaacacca------acccgtttcaaccactatccccaacaat |
157 |
Q |
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|||| |||||||| ||||| |||||||| |||||||| |||| ||||||||||||||||| || | |||| ||||||||| ||||||||| | |
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| T |
24733205 |
cttattttattctaatgggcatgttggtggctttagctgcaacgaagtatgaagctttaaaaactagtactaacccatttcaaccatcatccccaacttt |
24733304 |
T |
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| Q |
158 |
gttgctgtttttgacatctctatgttgtcac |
188 |
Q |
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| T |
24733305 |
gttgctgtttttgacatctctatgttgtcac |
24733335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 24648887 - 24648732
Alignment:
| Q |
29 |
caatcaaaacaaaatgattacgcgtaattac---aaagcttactttattctgatgggtttgttggtgactttagcttcaa-ctaagtatgaagctttaaa |
124 |
Q |
| |
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||||||||| ||||||||||||| ||| ||| |||| ||| |||||||||||||||||||||||| |||||||| ||| || ||| ||| |||||| |
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| T |
24648887 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
24648788 |
T |
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| Q |
125 |
caccaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctat |
180 |
Q |
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||| ||||| || ||||||| | || ||||||| | ||||||||||||||||||| |
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| T |
24648787 |
cactaacccattccaaccaccacccataacaatgctactgtttttgacatctctat |
24648732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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