View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0278_low_4 (Length: 427)
Name: NF0278_low_4
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 97 - 419
Target Start/End: Complemental strand, 34007850 - 34007528
Alignment:
| Q |
97 |
atttagcatttcacaattcgattgtacttacggcatgaatcttatataatgttgatatttgatatttatgcatgtgtagttttcaagtatgatgctccaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007850 |
atttagcatttcacaattcgattgtacttacggcatgaatcttatataatgttgatatttgatatttatgcatgtgtagttttcaagtatgatgctccaa |
34007751 |
T |
|
| Q |
197 |
atgcaacaagtttcccacacagcgtatacatgtttccaacttgggaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacacaca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007750 |
atgcaacaagtttcccacacagcgtatacatgtttccaacttggcaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacacaca |
34007651 |
T |
|
| Q |
297 |
aggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacctcggacaaatg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34007650 |
aggtgttggagagggattcaagttcgtgttaaacaagtggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgtcggacaaatg |
34007551 |
T |
|
| Q |
397 |
aagttcgctgttatgcctatgct |
419 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
34007550 |
aagttcgctgttatgccaatgct |
34007528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 96 - 419
Target Start/End: Complemental strand, 34000072 - 33999749
Alignment:
| Q |
96 |
catttagcatttcacaattcgattgtacttacggcatgaatcttatataatgttgatatttgatatttatgcatgtgtagttttcaagtatgatgctcca |
195 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34000072 |
catttagcattttacaattcgattgtacttacggcatgaatcttatataatgttgatatttgatatttatgcatgtgtagttttcaagtatgatgctcca |
33999973 |
T |
|
| Q |
196 |
aatgcaacaagtttcccacacagcgtatacatgtttccaacttgggaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacacac |
295 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33999972 |
aatgcaacaagtttcccacacagtgtatacatgtttccaacttggcagagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacacac |
33999873 |
T |
|
| Q |
296 |
aaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacctcggacaaat |
395 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
33999872 |
aaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaat |
33999773 |
T |
|
| Q |
396 |
gaagttcgctgttatgcctatgct |
419 |
Q |
| |
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|||||| | |||||||| ||||| |
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| T |
33999772 |
gaagtttacggttatgccaatgct |
33999749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 96 - 413
Target Start/End: Complemental strand, 33995310 - 33994992
Alignment:
| Q |
96 |
catttagcatttcacaattcgattgtacttacggcatgaatc-ttatataatgttgatatttgatatttatgcatgtgtagttttcaagtatgatgctcc |
194 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| | ||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
33995310 |
catttagcattttacaatttgattgtacttacgggacaaattattatatgatgttgatatttgatatttatccatgtgtagttttcaaatatgatgctcc |
33995211 |
T |
|
| Q |
195 |
aaatgcaacaagtttcccacacagcgtatacatgtttccaacttgggaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacaca |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33995210 |
aaatgcaacaagtttcccacacagcgtatacatgtttccaacttggcaaagcttcatgaaatgtgatgtgaagaaggctaagatggtggcaaatcacaca |
33995111 |
T |
|
| Q |
295 |
caaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacctcggacaaa |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
33995110 |
caaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtgagaaaaatggattacattgcaacgttggacaaa |
33995011 |
T |
|
| Q |
395 |
tgaagttcgctgttatgcc |
413 |
Q |
| |
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||||||| ||| ||||||| |
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| T |
33995010 |
tgaagtttgctattatgcc |
33994992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 155 - 419
Target Start/End: Complemental strand, 34003381 - 34003117
Alignment:
| Q |
155 |
ttgatatttatgcatgtgtagttttcaagtatgatgctccaaatgcaacaagtttcccacacagcgtatacatgtttccaacttgggaaagcttcatgaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
34003381 |
ttgatatttatgcatgtgtagttttcaaatatgatgctccaaatgcgacgagtttcccacacagcgtatacatgtttccaacttggcagagcttcatgaa |
34003282 |
T |
|
| Q |
255 |
atgtgatgtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttca |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34003281 |
atgtgatgtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcgtgttaaacaagtggaagccttattacttttca |
34003182 |
T |
|
| Q |
355 |
tgtggtgagaaaaatggattacattgcaacctcggacaaatgaagttcgctgttatgcctatgct |
419 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||||||| | |||||||| ||||| |
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| T |
34003181 |
tgtggtgagaaaaatggattacattgcaacgttggacaaatgaagtttacggttatgccaatgct |
34003117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 162 - 413
Target Start/End: Complemental strand, 33989253 - 33989002
Alignment:
| Q |
162 |
ttatgcatgtgtagttttcaagtatgatgctccaaatgcaacaagtttcccacacagcgtatacatgtttccaacttgggaaagcttcatgaaatgtgat |
261 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
33989253 |
ttatccatgtgtagttttcaaatatgatgctccaaatgcaaagagtttcccacacaacgtatacatgtttccaacttggcagagcttcatgaaatgtgat |
33989154 |
T |
|
| Q |
262 |
gtgaagaaggctaagatggtggcaaatcacacacaaggtgttggagagggattcaagttcgtgttaaacaaatggaagccttattacttttcatgtggtg |
361 |
Q |
| |
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| || | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||| |
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|
| T |
33989153 |
cttaaaatggctaagatgttggcaaatcacacacaaggtgttggagaggggttcaagttcgtgttaaacaagtggaagccctattactttgcatgtggtg |
33989054 |
T |
|
| Q |
362 |
agaaaaatggattacattgcaacctcggacaaatgaagttcgctgttatgcc |
413 |
Q |
| |
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|||||||| | || |||||||| | |||||||||||||| ||| ||||||| |
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| T |
33989053 |
agaaaaataggttgcattgcaatgttggacaaatgaagtttgctattatgcc |
33989002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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