View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0278_low_5 (Length: 410)
Name: NF0278_low_5
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 96 - 399
Target Start/End: Original strand, 40287677 - 40287981
Alignment:
| Q |
96 |
gttacatagtcaaatgataaacgaaaataatggacacgatctcatatattacctctctactcttgaattaatttttctcttctcctaactctctcccttc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40287677 |
gttacatagtcaaatgataaacgaaaataatggacacgatctcatatattacctctctactcttgaattaatttttctcttctcctaactctctcccttc |
40287776 |
T |
|
| Q |
196 |
atatactcacacgtacactcaatttccaacaactcctaaccacaaacattcccattttgtcgctaata-tattactacgtacttctcttccactcaaaca |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40287777 |
atatactcacacgtacactcaatttccaacaactcctaaccacaaacattcccattttgtcgctaatattattactacgtacttctcttccactcaaaca |
40287876 |
T |
|
| Q |
295 |
accattttctaccttttaatttgtttcttagagacataaacacaaaaacacactcacacataatcaaacaatggctttgtttgaccaatcatctcgtcac |
394 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40287877 |
accattttctaccttttaatttgtttcttagagacataaacacaaaaacacactcacacataatcaaacaatggctttgtttgaccaatcatctcgtcac |
40287976 |
T |
|
| Q |
395 |
tctct |
399 |
Q |
| |
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||||| |
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| T |
40287977 |
tctct |
40287981 |
T |
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