View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0278_low_8 (Length: 358)
Name: NF0278_low_8
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0278_low_8
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 32727174 - 32727495
Alignment:
Q
13
aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa
112
Q
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32727174
aatatccacttatttaaatcatattttgagaataaggaacttcgtaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa
32727273
T
Q
113
tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaac-----aaagataaacaatcttctagggaaagaccttccaaa
207
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||
T
32727274
tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaattaaagataaacaatctcctagagaaagaccttccaaa
32727373
T
Q
208
acgtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatca
307
Q
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
T
32727374
acgtacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatcaaatctatca
32727473
T
Q
308
actcaatccattttgcacgatc
329
Q
||||||||||||||||||||||
T
32727474
actcaatccattttgcacgatc
32727495
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 36218075 - 36217759
Alignment:
Q
13
aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa
112
Q
|||| |||||||| ||||||| |||||||||| | |||||||||| |||||||||| || ||||| || ||||||||||||||||||||||| ||||
T
36218075
aataaccacttatctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagcggaactccagcacattttttcacaatttcttttccaa
36217976
T
Q
113
tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta
212
Q
| | ||| |||| ||||||||| || |||| || ||||| ||||||||||| ||||||| ||| |||||||| |||| ||||||||||||||||| ||
T
36217975
tctccactagatttggatatttttcttcttctccatccttgaatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacata
36217876
T
Q
213
cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca
312
Q
||| |||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||| ||||| || ||||| |||||||
T
36217875
cgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaactca
36217776
T
Q
313
atccattttgcacgatc
329
Q
|||||||||||||||||
T
36217775
atccattttgcacgatc
36217759
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 35981617 - 35981933
Alignment:
Q
13
aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa
112
Q
|||| |||||||||||||||| ||||| || | |||||||||||||||| | |||| |||||||| ||| ||||||||||||||||||||| || |
T
35981617
aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga
35981716
T
Q
113
tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta
212
Q
||| ||| |||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| | | | |||||||||| ||||| ||
T
35981717
tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagata
35981816
T
Q
213
cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca
312
Q
|| |||| | ||||||||| |||| ||||||||| |||||||| ||||| | ||||||||||| ||||| || ||||| || ||||| ||||||||
T
35981817
cggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaactca
35981916
T
Q
313
atccattttgcacgatc
329
Q
|||||||||||||||||
T
35981917
atccattttgcacgatc
35981933
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 36003029 - 36003345
Alignment:
Q
13
aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa
112
Q
|||| |||||||||||||||| ||||| || | |||||||||||||||| | |||| |||||||| ||| ||||||||||||||||||||| || |
T
36003029
aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga
36003128
T
Q
113
tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta
212
Q
||| ||| |||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| | | | |||||||||| ||||| ||
T
36003129
tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagata
36003228
T
Q
213
cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca
312
Q
|| |||| | ||||||||| |||| ||||||||| |||||||| ||||| | ||||||||||| ||||| || ||||| || ||||| ||||||||
T
36003229
cggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaactca
36003328
T
Q
313
atccattttgcacgatc
329
Q
|||||||||||||||||
T
36003329
atccattttgcacgatc
36003345
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 36222067 - 36221753
Alignment:
Q
12
gaatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgcca
111
Q
|||||||||||||||||||||| ||||||| || | ||||||||||||||| | |||| || ||||| || ||||||||||||||||||||||| |||
T
36222067
gaatatccacttatttaaatcaaattttgataacagagaacttcctaatgttttgacagccagcggaactccagcacattttttcacaatttcttttcca
36221968
T
Q
112
atatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgt
211
Q
|| | ||| |||| || |||||| || |||| || || |||||||||||||| ||||||||| | ||||| ||| | |||||||||||||||| |
T
36221967
atctccactagatttgaatatttttcttcttctccgtctttaaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatat
36221868
T
Q
212
acgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactc
311
Q
|||| |||| ||||| |||||| |||||||||||||| |||| |||||||||||||| ||| ||| || || |||| ||||| || ||| || ||||||
T
36221867
acgaaggaacagtactcatcatggaagcaattgagttactacatgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactc
36221768
T
Q
312
aatccattttgcacg
326
Q
|||||||||||||||
T
36221767
aatccattttgcacg
36221753
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 35977087 - 35977367
Alignment:
Q
49
gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt
148
Q
|||||||||||||||||||||| || ||||||||| || ||||| ||||||||||| || || | || |||| ||||||||| | |||| ||||
T
35977087
gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt
35977186
T
Q
149
ccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagtt
248
Q
|||| || |||||||||||||||| |||||||||||| | | | |||||||||| ||||| || | |||| | ||||||||| ||||||||||||||
T
35977187
ccttgaacgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagtt
35977286
T
Q
249
gctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatc
329
Q
|||||||| ||||| || ||||||||||||| |||||| |||||||| ||||| |||| |||| ||| |||||||||||
T
35977287
actacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatc
35977367
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 35998499 - 35998779
Alignment:
Q
49
gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt
148
Q
|||||||||||||||||||||| || ||||||||| || ||||| ||||||||||| || || | || |||| ||||||||| | |||| ||||
T
35998499
gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt
35998598
T
Q
149
ccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagtt
248
Q
|||| || |||||||||||||||| |||||||||||| | | | |||||||||| ||||| || | |||| | ||||||||| ||||||||||||||
T
35998599
ccttgaacgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagtt
35998698
T
Q
249
gctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatc
329
Q
|||||||| ||||| || ||||||||||||| |||||| |||||||| ||||| |||| |||| ||| |||||||||||
T
35998699
actacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatc
35998779
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 35938939 - 35939250
Alignment:
Q
18
ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc
117
Q
|||||||||||||||| ||||||| || | ||||||||||||||| |||||| |||||||| ||| |||||||||||||||||| || |||| | |
T
35938939
ccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttgcaatcttc
35939038
T
Q
118
acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg
217
Q
|| |||| ||||||||| || ||||||||||||||||||| |||||||||||| |||||||| | ||| ||||| || | || | |||||||
T
35939039
acaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaactgttctctttagaaaggccatgtaatagatacgagg
35939138
T
Q
218
gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca
317
Q
||| ||| ||| ||||||||||||| || || || ||||| ||||| |||||||||| | || ||| || |||||||| ||||| |||||||||||||
T
35939139
gaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaactcaatcca
35939238
T
Q
318
ttttgcacgatc
329
Q
||||| ||||||
T
35939239
ttttgaacgatc
35939250
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 35946393 - 35946704
Alignment:
Q
18
ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc
117
Q
||||||| ||| |||| | |||||||| | |||||| ||||||||||||| | |||||||||||| |||||||||||||||||||| || ||
T
35946393
ccacttacttatatcaaagtttgagaagagagaacttgctaatgttctcacggctagtggaaccccttggcattttttcacaatttcttttcctatcgct
35946492
T
Q
118
acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg
217
Q
|| |||| |||||| || | ||||||||||||| ||||||||||||||||||| ||| ||||||| | | | |||||||||||||||| || | |
T
35946493
actagatttggatactttttttcttcaccttccttgaatgcccatttgacaaacagagacaaacaattctttggagaaagaccttccaaaatatatggag
35946592
T
Q
218
gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca
317
Q
||| | ||||||||| |||||||||| ||| || ||||| ||||| || ||||||||||||| |||||| |||||||| ||||| |||| |||| |||
T
35946593
gaacatcacccatcatcgaagcaattgcgttactgcgtgttgtcaccataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagcca
35946692
T
Q
318
ttttgcacgatc
329
Q
|||||||||||
T
35946693
ctttgcacgatc
35946704
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 35957601 - 35957912
Alignment:
Q
18
ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc
117
Q
||||||| ||| |||| | |||||||| | |||||| |||| |||||||| | |||||||||||| |||||||||||||||||||| ||||| |
T
35957601
ccacttacttatatcaaagtttgagaagagagaacttgctaaagttctcacggctagtggaaccccttggcattttttcacaatttcttttccaatctct
35957700
T
Q
118
acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg
217
Q
|| ||| |||||| || | |||| |||||||| ||||||||||||||||||| ||||| |||||| | | | |||||||||| ||||| || |
T
35957701
acttgatttggataatttttttcttcgccttccttgaatgcccatttgacaaacagagatatacaatcctttggagaaagaccttttaaaacataaggaa
35957800
T
Q
218
gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca
317
Q
|| | |||||||||||||||||||||||| || ||||| ||||| || ||||||||||||| |||||| |||||||| | || ||||| |||| |||
T
35957801
aaacatcacccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaattcgatcaattcaagcca
35957900
T
Q
318
ttttgcacgatc
329
Q
|||||||||||
T
35957901
ctttgcacgatc
35957912
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 331
Target Start/End: Original strand, 35952171 - 35952330
Alignment:
Q
172
aaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattt
271
Q
||||||||||||| | | | |||||||||| |||||| |||||||||| | |||||||||| |||||||||| | |||||||| ||||| || ||||
T
35952171
aaagataaacaattctttggagaaagacctttcaaaacatacgagggaacattacccatcatccaagcaattgaactactacgtgttgtcaccataattt
35952270
T
Q
272
tgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatctg
331
Q
||||| ||| |||||| |||| || ||| | |||| |||||||| |||||||||||||
T
35952271
tgctttctggtgcaccaacttctagcaaatatttcaattcaatccactttgcacgatctg
35952330
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 35952032 - 35952148
Alignment:
Q
18
ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc
117
Q
||||||| ||||||| | |||||||| | ||||||||| |||| | |||||| |||||||||||| ||||||||||||| | ||||| ||||| |
T
35952032
ccacttacttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaaccccttgacattttttcacagtatcttttccaatctct
35952131
T
Q
118
acgagatctggatattt
134
Q
|| |||| |||||||||
T
35952132
actagatttggatattt
35952148
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 18125316 - 18125632
Alignment:
Q
13
aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa
112
Q
|||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||||| ||||| || |
T
18125316
aatatccatgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctagtggaaccccttggcattttttcacaatctcttttccta
18125415
T
Q
113
tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta
212
Q
| | || |||| ||||||||| || |||| |||||||| ||||||||||||||||| | |||||||||||| | | |||||||||| |||||| ||
T
18125416
tctctactagatttggatatttttcttcttcgccttccttgaatgcccatttgacaaatagagataaacaatccttcaaagaaagaccttgcaaaacata
18125515
T
Q
213
cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca
312
Q
||||||| | |||||||||| |||||||||||||| ||||||| ||||| || |||||||||||| || || |||||||| ||||| |||||||
T
18125516
tgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttcctcttgtgccaacttttatcaaatctttcaactcg
18125615
T
Q
313
atccattttgcacgatc
329
Q
||||| |||||||||||
T
18125616
atccactttgcacgatc
18125632
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 18117672 - 18117971
Alignment:
Q
22
ttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacga
121
Q
|||||||||||| ||||||| || | | ||||||||||||||||| ||||||||||| || ||||| |||||||||||||| || || | || |
T
18117672
ttatttaaatcaaattttgaaaacagacagcttcctaatgttctcacgacgagtggaacccccgcgcatttcttcacaatttcttttcctatctcaacta
18117771
T
Q
122
gatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaat
221
Q
||| ||||||||| || |||| |||||||| ||||||||||| ||||||||||||||||| | ||| | ||||| |||| ||||| || |||||||
T
18117772
gatttggatatttgtcttcttcgccttccttgaatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggagggaac
18117871
T
Q
222
agtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccatttt
321
Q
|||||||||||| || |||||||||||||| ||||| ||| | |||| |||||||||| ||| || ||||| || ||||| ||||||| |||||||||
T
18117872
agtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatccatttt
18117971
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 26329104 - 26328799
Alignment:
Q
17
tccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatg
116
Q
||||||||| ||||||| |||||||||| | ||||||||||| ||| |||| | | ||||| |||| ||||||||| | || ||||| ||||| |
T
26329104
tccacttatctaaatcaaattttgagaagagtgaacttcctaacgttttcactgctaatggaatccctcggcattttttcgctatatcttttccaatctc
26329005
T
Q
117
cacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgag
216
Q
| |||| |||||| || ||| |||| |||||||||||||||||||||||||| | ||| ||||||| || | |||||||||| ||| ||| |
T
26329004
cgatagatgtggatactttacttcttctccttccttaaatgcccatttgacaaagagagacaaacaattatccaaagaaagaccttttaaagtatacatg
26328905
T
Q
217
ggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcc
316
Q
|||| || |||||||| |||||||| |||| |||||||| ||||||| |||||||||| || ||||||| |||||||| |||| ||||||||||||
T
26328904
ggaaccgttcccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatcc
26328805
T
Q
317
attttg
322
Q
||||||
T
26328804
attttg
26328799
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 49352394 - 49352282
Alignment:
Q
151
ttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagttgc
250
Q
||||| |||||||||||||||| |||||| |||| ||||| |||||||||||||||| ||| || | | || ||||||||| |||||||||| ||
T
49352394
ttaaaagcccatttgacaaacacagataaggaatcctctagagaaagaccttccaaaatgtatgatgtgttggtgcccatcattttggcaattgagtggc
49352295
T
Q
251
tacgtgtcgtcac
263
Q
||||||| |||||
T
49352294
tacgtgtagtcac
49352282
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 7128578 - 7128615
Alignment:
Q
76
ggaacccctgcacattttttcacaatttctttgccaat
113
Q
|||||||||| |||||||||||||||||| ||||||||
T
7128578
ggaacccctgaacattttttcacaatttccttgccaat
7128615
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 7721852 - 7721889
Alignment:
Q
76
ggaacccctgcacattttttcacaatttctttgccaat
113
Q
|||||||||| |||||||||||||||||| ||||||||
T
7721852
ggaacccctgaacattttttcacaatttccttgccaat
7721889
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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