View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0278_low_9 (Length: 341)
Name: NF0278_low_9
Description: NF0278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0278_low_9 |
 | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0237 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 26)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 24730147 - 24729903
Alignment:
| Q |
9 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24730147 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagttcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
24730048 |
T |
|
| Q |
109 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24730047 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagacccaattgagaaaagcaattgatgaggatgttgaaa |
24729948 |
T |
|
| Q |
209 |
gtgaagaaatctgactgaattccatttaattccatttgttgatga |
253 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24729947 |
gtgaagaaatctgacacaattccatttaattccatttgttgatga |
24729903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 24890953 - 24891197
Alignment:
| Q |
9 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24890953 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
24891052 |
T |
|
| Q |
109 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaa |
208 |
Q |
| |
|
|||| |||||| | |||||||||| ||||||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24891053 |
ggcagttgggtgataaccctttttgagaatcttggcgaatatagaaaaagaaagagagtttagacccaattgagaaaagcaattgatgaggatgttgaaa |
24891152 |
T |
|
| Q |
209 |
gtgaagaaatctgactgaattccatttaattccatttgttgatga |
253 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24891153 |
gtgaagaaatctgactcaattccatttaattccatttgttgatga |
24891197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 24711430 - 24711207
Alignment:
| Q |
9 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
108 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
24711430 |
ccaaatgaaaacccaatgctaccaccttattatgaaagtgcaatgcttgatggatctgacctttgagacacagacgcttgatgagtgtagtgaatgttat |
24711331 |
T |
|
| Q |
109 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaa |
208 |
Q |
| |
|
|||| |||||| | |||||||||| ||||||||| | || | ||||||||||||||||||| | || |||||||||||||||||||||||||| |||||| |
|
|
| T |
24711330 |
ggcagttgggtgataaccctttttgagaatcttggccaatatagaaaaagaaagagagttttgtcccaattgagaaaagcaattgatgaggatattgaaa |
24711231 |
T |
|
| Q |
209 |
gtgaagaaatctgactgaattcca |
232 |
Q |
| |
|
||||| |||||||| | ||||||| |
|
|
| T |
24711230 |
gtgaataaatctgattcaattcca |
24711207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 29073055 - 29072852
Alignment:
| Q |
9 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
108 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
29073055 |
ccaaatgaaatcccatcgcaaccaccttatcatgaaagtgcaatgcttaatgaatctgacctttgagacagagacccttgatgagtgtagttaaagttat |
29072956 |
T |
|
| Q |
109 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaa |
208 |
Q |
| |
|
| ||||||||||| |||||||||||||||| || | || |||||||||||||||| |||| |||| ||||||||||| ||||| || | |||||| ||| |
|
|
| T |
29072955 |
gacatttgggtcataaccctttttaagaatgttagcaaatacagaaaaagaaagagggttttgacccaattgagaaaaacaattaatcaagatgttcaaa |
29072856 |
T |
|
| Q |
209 |
gtga |
212 |
Q |
| |
|
|||| |
|
|
| T |
29072855 |
gtga |
29072852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 29105628 - 29105425
Alignment:
| Q |
9 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
108 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
29105628 |
ccaaatgaaatcccatcgcaaccaccttatcatgaaagtgcaatgcttaatgaatctgacctttgagacagagacccttgatgagtgtagttaaagttat |
29105529 |
T |
|
| Q |
109 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaa |
208 |
Q |
| |
|
| ||||||||||| |||||||||||||||| || | || |||||||||||||||| |||| |||| ||||||||||| ||||| || | |||||| ||| |
|
|
| T |
29105528 |
gacatttgggtcataaccctttttaagaatgttagcaaatacagaaaaagaaagagggttttgacccaattgagaaaaacaattaatcaagatgttcaaa |
29105429 |
T |
|
| Q |
209 |
gtga |
212 |
Q |
| |
|
|||| |
|
|
| T |
29105428 |
gtga |
29105425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 29349307 - 29349541
Alignment:
| Q |
11 |
aaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatgg |
110 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||| | || ||||||| |
|
|
| T |
29349307 |
aaatgaaatccaagcgcaaccaccttatcatgaaagtgcaaggcttgatgaatctgacctttgagacacagacccttaatgagtgtggttaaagttatgg |
29349406 |
T |
|
| Q |
111 |
catttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagt |
210 |
Q |
| |
|
||||||| ||| |||||||||| ||||| ||| | || ||||||||||||| | | | |||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29349407 |
catttggttcataaccctttttgagaatgttggcaaatacagaaaaagaaaaatgggtatgacccaattgagaaaaacaattgatgaggatgttgaaagt |
29349506 |
T |
|
| Q |
211 |
gaagaaatctgactgaattccatttaattccattt |
245 |
Q |
| |
|
|| || ||||| |||||| || |||||||||| |
|
|
| T |
29349507 |
gaccaagtctgaagcaattccgttgaattccattt |
29349541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 29893825 - 29893604
Alignment:
| Q |
29 |
accaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaaaccct |
128 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| ||||||| ||| || | | ||||| |
|
|
| T |
29893825 |
accacattatcatgaaagagcaatgcttgatggatctgacctttaagacaaagacccttgatgagtgtagtgaaggttatggtattgggatgataaccca |
29893726 |
T |
|
| Q |
129 |
ttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaat |
228 |
Q |
| |
|
|| | |||||||| |||||||||| |||| || || | | ||||| |||||| ||||||||||||||||||||||||||||||| || || | | ||| |
|
|
| T |
29893725 |
ttctgagaatctttgcgaaaacagagaaagcaaaagggataagacccaattgacaaaagcaattgatgaggatgttgaaagtgaaaaagtcaggattaat |
29893626 |
T |
|
| Q |
229 |
tccatttaattccatttgttga |
250 |
Q |
| |
|
||| | ||||||||||||||| |
|
|
| T |
29893625 |
tccctcaaattccatttgttga |
29893604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 29367129 - 29367372
Alignment:
| Q |
10 |
caaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatg |
109 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||| ||||| |||||||| || |||||||||||||| |||||||| ||||||||| | || |||||| |
|
|
| T |
29367129 |
caaatgaaatccaagcgcaaccaccttatcatgaaactgcaaggcttgatgaatctgacctttgagacacagacccttaatgagtgtagttaaagttatg |
29367228 |
T |
|
| Q |
110 |
gcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaag |
209 |
Q |
| |
|
||||||| ||| ||||| | ||||||||||| | ||||||||||||||||||| |||| |||| ||||||||||| ||||| || | |||| | ||| |
|
|
| T |
29367229 |
acatttggctcataacccatcttaagaatcttagccaaaacagaaaaagaaagagggttttgacccaattgagaaaaacaattaatcaagatgctcaaaa |
29367328 |
T |
|
| Q |
210 |
tgaagaaatctgactgaattccatttaattccatttgttgatga |
253 |
Q |
| |
|
||| || ||||| |||||| || |||||||||||| ||||| |
|
|
| T |
29367329 |
tgaccaagtctgaagtaattccgttgaattccatttgtcgatga |
29367372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 29928542 - 29928321
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaaaccctttt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||| || ||| || |||| |||| |
|
|
| T |
29928542 |
accttatcatgaaagtgcaatgcttgatggatgtcacctttgagacaaagacccttgatgagtgtagtgaaggttatggtatctggctcgtaaccgtttt |
29928443 |
T |
|
| Q |
132 |
taagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattcc |
231 |
Q |
| |
|
| |||||||| | ||||||||||||| || || | | |||| |||||| | || |||||||||||||| || |||||| || ||||| |||||| |
|
|
| T |
29928442 |
tgagaatctttgccaaaacagaaaaagcaaaagggatgtgacccaattgacagaaagaattgatgaggatgctgcaagtgaccaagtctgaagcaattcc |
29928343 |
T |
|
| Q |
232 |
atttaattccatttgttgatga |
253 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
29928342 |
gtttaattccatttgtggatga |
29928321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 29904925 - 29904749
Alignment:
| Q |
29 |
accaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaaaccct |
128 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || || || ||||| |
|
|
| T |
29904925 |
accagcttgtcatgaaagtgcaatgcttgatggatgtcacctttgagacagagacccttgatgagtgtattcaatgttatggtatccggctcgtaaccca |
29904826 |
T |
|
| Q |
129 |
ttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttg |
205 |
Q |
| |
|
| ||||||||||| | |||||||||||||||| || | | ||||| |||||| | || |||||| ||||||||||| |
|
|
| T |
29904825 |
tcttaagaatcttagccaaaacagaaaaagaaaaagggataagacccaattgacagaaacaattggtgaggatgttg |
29904749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 24264459 - 24264658
Alignment:
| Q |
9 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
108 |
Q |
| |
|
||||||||||||| | ||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||| |||||| |||| |||||| |||||||| |
|
|
| T |
24264459 |
ccaaatgaaatccaagcgctaccagcttgtcatgaaagttcaatgcttgatggatctgacctttgagacagaaacccttaatgaatgtattcaatgttat |
24264558 |
T |
|
| Q |
109 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaa |
208 |
Q |
| |
|
|| || ||| ||| ||||| |||| |||||||| | |||||||| |||| || || | | ||||| |||||| | || ||||||||||||||||||||| |
|
|
| T |
24264559 |
ggtatctggctcataacccattttgagaatctttgctaaaacagagaaagcaaaagggatgagacccaattgacagaaacaattgatgaggatgttgaaa |
24264658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 29084310 - 29084161
Alignment:
| Q |
9 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
108 |
Q |
| |
|
||||||||||||| | ||||||| ||| ||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29084310 |
ccaaatgaaatccaagcgctaccagcttgtcatgaaagagaaatgcttgatggatctgacctttgagacagagacccttgatgagtgtattcaatgttat |
29084211 |
T |
|
| Q |
109 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaag |
158 |
Q |
| |
|
|| ||| || | | ||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
29084210 |
ggtattgggatgataacccattttgagaatctttgcgaaaacagaaaaag |
29084161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 34785694 - 34785525
Alignment:
| Q |
24 |
gtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaa |
123 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| | || |||||| ||||||||||| | |
|
|
| T |
34785694 |
gtgctaccagcttgtcatgaaagtgcaatgcttgatcaatacgacccttgagacagagacccttgatgagtgtagttaaagttatgacatttgggtcata |
34785595 |
T |
|
| Q |
124 |
acc-ctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaatt |
192 |
Q |
| |
|
||| |||||||||||| || | || |||||||||||||||| |||| |||| ||||||||||| ||||| |
|
|
| T |
34785594 |
acctctttttaagaatgttagcaaatacagaaaaagaaagagggttttgacccaattgagaaaaacaatt |
34785525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 29211802 - 29211981
Alignment:
| Q |
26 |
gctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaaac |
125 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||||| ||| || | | ||| |
|
|
| T |
29211802 |
gctaccagcttgtcatgaaagttcaatgcttgatggatctgacctttgagacaaagacccttgatgagtgtagtgaaggttatggtattgggattataac |
29211901 |
T |
|
| Q |
126 |
cctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttg |
205 |
Q |
| |
|
|| |||| |||||||| ||||||||||||||| || || | | ||||| |||||| | || ||||||||||| |||||| |
|
|
| T |
29211902 |
ccattttgagaatctttgcgaaaacagaaaaagcaaaagggataagacccaattgacagaaacaattgatgagaatgttg |
29211981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 30119062 - 30119232
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaaaccctttt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||| || ||| || |||| |||| |
|
|
| T |
30119062 |
accttatcatgaaagtgcaatgcttgatggatgtcacctttgagacaaagacccttgatgagtgtagtgaaggttatggtatctggctcgtaaccgtttt |
30119161 |
T |
|
| Q |
132 |
taagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatg |
202 |
Q |
| |
|
| |||||||| | ||||||||||||| || || ||| |||| |||||| | || |||||||||||||| |
|
|
| T |
30119162 |
tgagaatctttgccaaaacagaaaaagcaaaagggttgtgacccaattgacagaaagaattgatgaggatg |
30119232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 253
Target Start/End: Original strand, 28927718 - 28927933
Alignment:
| Q |
38 |
tcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaaaccctttttaagaa |
137 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||| | | || |||||||||| ||||||| ||||||| || | || |
|
|
| T |
28927718 |
tcatgaaagtgcaatgcttgatgaatctgacctttaagacacagacccttgatgagtgaagttaaagttatggcatctgggtcataacccttcttgaaaa |
28927817 |
T |
|
| Q |
138 |
tcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaagaaatctgactgaattccatttaa |
237 |
Q |
| |
|
||||| ||| || ||||||||||||| |||| |||| ||||||||||| | ||| || | |||| | ||||||| || | ||| || ||| ||||| |
|
|
| T |
28927818 |
tcttggcgagtacggaaaaagaaagagggttttgacccaattgagaaaaactattaatcaagatgctcaaagtgactaagtttgaaacaaatccgtttaa |
28927917 |
T |
|
| Q |
238 |
ttccatttgttgatga |
253 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28927918 |
ttccatttgttgatga |
28927933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 29115551 - 29115357
Alignment:
| Q |
11 |
aaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatgg |
110 |
Q |
| |
|
||||||||||| | || |||||||||||||||||| | |||||||| ||||| |||||||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
29115551 |
aaatgaaatccaagcgccaccaccttatcatgaaagagaaatgcttgctggatctgacctttgagacaaagacccttgatgagtgtagtgaaggttatgg |
29115452 |
T |
|
| Q |
111 |
catttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttg |
205 |
Q |
| |
|
|| ||| | ||||| |||| |||||||| ||||||||||||||| || || | | ||||| |||||| | || |||||||| ||||||||| |
|
|
| T |
29115451 |
tatctggcacgtaacccattttgagaatctttgcgaaaacagaaaaagcaaaagggataagacccaattgacagaaacaattgataaggatgttg |
29115357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 29908860 - 29908734
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaaaccctttt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||| || ||| || |||| |||| |
|
|
| T |
29908860 |
accttatcatgaaagtgcaatgcttgatggatgtcacctttgagacaaagacccttgatgagtgtagtgaaggttatggtatctggctcgtaaccgtttt |
29908761 |
T |
|
| Q |
132 |
taagaatcttgccgaaaacagaaaaag |
158 |
Q |
| |
|
| |||||||| | ||||||||||||| |
|
|
| T |
29908760 |
tgagaatctttgccaaaacagaaaaag |
29908734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 29098633 - 29098439
Alignment:
| Q |
11 |
aaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatgg |
110 |
Q |
| |
|
||||||||||| | || |||||||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||| |||||||| |||| ||||||| |
|
|
| T |
29098633 |
aaatgaaatccaagcgccaccaccttatcatgaaagagaaatgcttgctggatctgacctttgagacaaagacccttgctgagtgtagtgaaggttatgg |
29098534 |
T |
|
| Q |
111 |
catttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttg |
205 |
Q |
| |
|
|| ||| | ||||| |||| |||||||| ||||||||||||||| || || | | ||||| |||||| | || |||||||| ||||||||| |
|
|
| T |
29098533 |
tatctggcacgtaacccattttgagaatctttgcgaaaacagaaaaagcaaaagggataagacccaattgacagaaacaattgataaggatgttg |
29098439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 29881704 - 29881635
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
29881704 |
accttatcatgaaagtgcaatgcttgatggatgtcacctttgagacaaagacccttgatgagtgtattga |
29881635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 29897351 - 29897178
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgggtcaaaaccctttt |
131 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| | |||||||||| || || || |||| |||| |
|
|
| T |
29897351 |
accttgtcatgaaagtgcaatgcttgatggatctgacctttgagacagagaaccttgatgaatgtagtcaatgttatggtatcaggctcgtaaccgtttt |
29897252 |
T |
|
| Q |
132 |
taagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttg |
205 |
Q |
| |
|
| |||||||| | |||| ||| |||| || |||| | ||||| | ||| | || |||||||||||||||||| |
|
|
| T |
29897251 |
tgagaatcttagccaaaatagagaaagcaaaagagataagacccagttggcagaaacaattgatgaggatgttg |
29897178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 29834484 - 29834406
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| |||| | || ||||||| |
|
|
| T |
29834484 |
accttatcatgaaagtgcaatgcttgatggatctgacctttgagacagaaacccttaatgaatgtagtcaacgttatgg |
29834406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 29865918 - 29865840
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| |||| | || ||||||| |
|
|
| T |
29865918 |
accttatcatgaaagtgcaatgcttgatggatctgacctttgagacagaaacccttaatgaatgtagtcaacgttatgg |
29865840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 29886566 - 29886520
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagaca |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29886566 |
accttatcatgaaagtgcaatgcttgatggatgtcacctttgagaca |
29886520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 29358450 - 29358509
Alignment:
| Q |
58 |
atggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcatttgg |
117 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
29358450 |
atggatcttaccattgagacagagacccttgatgagtgtattcaatgttatggtatttgg |
29358509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 24272617 - 24272665
Alignment:
| Q |
40 |
atgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttg |
88 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| |||||||| |
|
|
| T |
24272617 |
atgaaagtgcaatgcttgatgtatctgacctttgagacagtgacccttg |
24272665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 54408 - 54611
Alignment:
| Q |
9 |
ccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttat |
108 |
Q |
| |
|
||||||||||||| | ||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||| |||||| |||| |||||| |||||||| |
|
|
| T |
54408 |
ccaaatgaaatccaagcgctaccagcttgtcatgaaagttcaatgcttgatggatctgacctttgagacagaaacccttaatgaatgtattcaatgttat |
54507 |
T |
|
| Q |
109 |
ggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaa |
208 |
Q |
| |
|
| || ||| ||| ||||| |||| |||||||| | |||||||| |||| || || | | ||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
54508 |
gatatctggctcataacccattttgagaatctttgccaaaacagagaaagcaaaagggataagacccaattgacaaaagcaattgatgaggatgttgaaa |
54607 |
T |
|
| Q |
209 |
gtga |
212 |
Q |
| |
|
|||| |
|
|
| T |
54608 |
gtga |
54611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 24219947 - 24220186
Alignment:
| Q |
14 |
tgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcat |
113 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| | || |||||||||| |
|
|
| T |
24219947 |
tgaaatccaagtgctaacaccttatcatgaaagtgcaatgctttatggatgtcacctttgagacaaagacccttgatgagtgtagtcaaagttatggcat |
24220046 |
T |
|
| Q |
114 |
ttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgatgaggatgttgaaagtgaa |
213 |
Q |
| |
|
|| ||| |||||||||| ||||| ||| || || ||||| ||||||||||| |||| ||||||||||| |||||||| | |||| | ||||||| |
|
|
| T |
24220047 |
ccggctcataaccctttttgagaatgttggaaaatactgaaaatgaaagagagttatgacccaattgagaaaaacaattgatcaagatgctcaaagtgac |
24220146 |
T |
|
| Q |
214 |
gaaatctgactgaattccatttaattccatttgttgatga |
253 |
Q |
| |
|
|| | ||| |||||||| |||||||||||| ||||| |
|
|
| T |
24220147 |
caagtttgatgcgattccattgaattccatttgtcgatga |
24220186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 395 - 326
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
395 |
accttatcatgaaagtgcaatgcttgatggatgtcacctttgagacaaagacccttgatgagtgtattga |
326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 21612 - 21534
Alignment:
| Q |
32 |
accttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| |||| | || ||||||| |
|
|
| T |
21612 |
accttatcatgaaagtgcaatgcttgatggatctgacctttgagacagaaacccttaatgaatgtagtcaacgttatgg |
21534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 10129424 - 10129243
Alignment:
| Q |
14 |
tgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaatgttatggcat |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| | | | | ||||| |||||||||||||| |||| |||| | || ||||| ||| |
|
|
| T |
10129424 |
tgaaatccctgtgctaccaccttgtcatgaaagtgcaatgcttcacgaacctcgcctttaagacagagacccttaatgattgtagtcaaaattatgacat |
10129325 |
T |
|
| Q |
114 |
ttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaagagagtttagaccgaattgagaaaagcaattgat |
195 |
Q |
| |
|
|||| || ||||| | || ||||||||| | || || ||||| ||||||| |||| |||| || ||| |||| |||||||| |
|
|
| T |
10129324 |
ttggctcgtaacccatcttgagaatcttggcaaacactgaaaaggaaagagggttttgacccaaatgacaaaaacaattgat |
10129243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 15063578 - 15063735
Alignment:
| Q |
4 |
ttgacccaaatgaaatccctgtgctaccaccttatcatgaaagtgcaatgcttgatggatgtgacctttgagacagagacccttgatgagtgtattgaat |
103 |
Q |
| |
|
|||| |||| ||||| ||||| |||||||||||||| ||||||| |||||||| ||| | | ||||| ||||| ||||||||||||||| || |||| |
|
|
| T |
15063578 |
ttgatccaactgaaacccctgcgctaccaccttatcgtgaaagtacaatgctttatgaacctcgcctttaagacaaagacccttgatgagtatagtgaaa |
15063677 |
T |
|
| Q |
104 |
gttatggcatttgggtcaaaaccctttttaagaatcttgccgaaaacagaaaaagaaa |
161 |
Q |
| |
|
|||| |||| |||| | |||||||||| ||||||||| |||| || ||||| |||| |
|
|
| T |
15063678 |
gttacagcatcagggtgataaccctttttgagaatcttggcgaatacggaaaatgaaa |
15063735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University