View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_high_11 (Length: 307)
Name: NF0279_high_11
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 7340405 - 7340253
Alignment:
| Q |
105 |
ctcaagagaagaaaagatttttcaaaagtggaagaaaggttaggtaaatgtatacacgtagtagnnnnnnnnnatagtagctagctagtgtgttagagtt |
204 |
Q |
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| T |
7340405 |
ctcaagagaagaaaagatttttcaaaagtggaagaaaggttaggtaaatgtatacacgtagtagtttttttt-atagtagctagctagtgtgttagagtt |
7340307 |
T |
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| Q |
205 |
aaatgtgtccaattgatgtactttttataggtgatgaattggatatatattctt |
258 |
Q |
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| T |
7340306 |
aaatgtgtccaattgatgtactttttataggtgatgaattggatatattttctt |
7340253 |
T |
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