View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_high_4 (Length: 512)
Name: NF0279_high_4
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_high_4 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 30 - 501
Target Start/End: Complemental strand, 176188 - 175719
Alignment:
| Q |
30 |
catgaagagtggtcatctggatcttgtgattttaggaatcggttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcc |
129 |
Q |
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| T |
176188 |
catgaagagtggtcatctggatcttgtgattttaggaatcggttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcc |
176089 |
T |
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| Q |
130 |
cttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaaatttcatt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
176088 |
cttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttttgtaaacatcatt |
175989 |
T |
|
| Q |
230 |
ttgaaatattccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagactt |
329 |
Q |
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| T |
175988 |
ttga---attccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagactt |
175892 |
T |
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| Q |
330 |
ttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggttccatagtagcggatcaccacagtcgaatctgtcatcgatgg-ttgaagac |
428 |
Q |
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| T |
175891 |
ttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggttccatagtagcggatcaccacagtcgaatctgtcatcgatggtttgaagac |
175792 |
T |
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| Q |
429 |
agatgatgccatcgcaagagtcagctatgatagcacgaatgttagaaggatttagaggaaagttgagcttcat |
501 |
Q |
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| T |
175791 |
agatgatgccatcgcaagagtcagctatgatagcacgaatgttagaaggatttagaggaaagttgagcttcat |
175719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 7564960 - 7565106
Alignment:
| Q |
72 |
ttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatcc |
171 |
Q |
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|||| |||||||| ||| ||||||||| | ||||||||||||||| |||||| ||||| |||| |||| || || ||||||||||||||||||| |
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| T |
7564960 |
ttatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatcc |
7565059 |
T |
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| Q |
172 |
ttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
218 |
Q |
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| T |
7565060 |
ttctccaaacattgctacctaaagtatgaaccttaacttgagttttg |
7565106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 1471188 - 1471278
Alignment:
| Q |
128 |
cccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
218 |
Q |
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| T |
1471188 |
cccttcgggttgacccatgagctgagaagggaagtcttgaatcgttctccaaaaattgttacctaaagtatgaaccttaactagagttttg |
1471278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 55419619 - 55419478
Alignment:
| Q |
77 |
ttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctc |
176 |
Q |
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| T |
55419619 |
ttgatcttctatggcccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaagtctggtatccttttc |
55419520 |
T |
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| Q |
177 |
caagagttggtgcctaaagtgtgagccttaacttgagttttg |
218 |
Q |
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| T |
55419519 |
caaaagttggtacctaaagtatgagccctaacttgagttttg |
55419478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 213
Target Start/End: Complemental strand, 3926898 - 3926760
Alignment:
| Q |
75 |
ttttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttc |
174 |
Q |
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||||||| ||| |||||||||| || |||||||||||||||| ||||||| ||| | ||||| |||||||| | |||||||||| ||||||||| | |
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| T |
3926898 |
ttttgattttctatggcccaattaattgtgccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaagtttggaatcctcc |
3926799 |
T |
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| Q |
175 |
tccaagagttggtgcctaaagtgtgagccttaacttgag |
213 |
Q |
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| T |
3926798 |
tccaaaaattggtacctagagtatgaaccctaacttgag |
3926760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 1421453 - 1421520
Alignment:
| Q |
153 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaa |
221 |
Q |
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| T |
1421453 |
gaagggaagtccttaatccttctccaagagttggtgcc-aaagtatgaacttcaacttgagttttgtaa |
1421520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 40659 - 40724
Alignment:
| Q |
153 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
218 |
Q |
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| T |
40659 |
gaagggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg |
40724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 24233688 - 24233753
Alignment:
| Q |
153 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
218 |
Q |
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||||||||||| ||||||||||||||||| ||| ||||| || ||| | ||||||||||||||| |
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| T |
24233688 |
gaagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaacttgagttttg |
24233753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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