View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_high_7 (Length: 390)
Name: NF0279_high_7
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 29 - 356
Target Start/End: Original strand, 40269462 - 40269789
Alignment:
| Q |
29 |
acacaatactctgacaacaaagtgctacgaggagcaagttgatgcattatgcttcagaaaaattgtgccttgtggcactttgttgaagtagatttacttg |
128 |
Q |
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| T |
40269462 |
acacaatactctgacaacaaagtgctacgaggagcaagttgatgcattatgcttcagaaaaattgtgccttgtggcactttgttgaagtagatttacttg |
40269561 |
T |
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| Q |
129 |
caatcactacccgtattggttgaaacgaatttttccaacaagtagtttttgttaatcctttnnnnnnngtagttttctttaatgacattaaagacttaaa |
228 |
Q |
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| T |
40269562 |
caatcacaccccgtattggttgaaacgaatttttccaacaagtagtttttgttaatcctttaaaaaaagtagttttctttaatgacgttaaagacttcaa |
40269661 |
T |
|
| Q |
229 |
caacatttactttgtcattttcaaaccaaatgtctaggttgcgtgcattgttttctgcagattgaggttgtcacaacccctctagggttgtgaacggtgt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40269662 |
caacatttactttgtcattttcaaaccaaatgtctaggttgcgtgcattgttttctgcagattgaggttgtcacaacccctctagggttgtgaacggtgt |
40269761 |
T |
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| Q |
329 |
tcctcgcacaaacaaacatttactcaac |
356 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
40269762 |
tcgtcgcacaaacaaacatttactcaac |
40269789 |
T |
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