View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_high_8 (Length: 382)
Name: NF0279_high_8
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 69 - 375
Target Start/End: Original strand, 27671049 - 27671355
Alignment:
| Q |
69 |
gttatatagtgttataatactaataaaacacagtttgcttatctacgttacatcatatatctatctttcatcaaatggttgcacgagtacgatatgctag |
168 |
Q |
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| T |
27671049 |
gttatatagtgttataatactaataaaacacagtttgcttatctacgttacatcatatatctatctttcatcaactggttgcaggagtacgatatgctag |
27671148 |
T |
|
| Q |
169 |
tttatttaaaaattgaggaagatgatattaagaatcatggttccaacctgaagagaattgactagtacaagacttgagagactcaaggctgagccacttg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27671149 |
tttatttaaaaattgaggaagatgatattaagaatcatggttccaacctgaagagaattgactagtacaagacttgagagactcaaggctgagccacttg |
27671248 |
T |
|
| Q |
269 |
caattgagtgaatttacattcaatatcccttctaggacttttgggagtacaactgatggaggtaaatgatttttgaagctctcgtcatcaagactgtcac |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27671249 |
caattgagtgaatttacattcaatatcccttctaggacttttgggagtacaactgatgtaggtaaatgatttttgaagctctcgtcctcaagactgtcac |
27671348 |
T |
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| Q |
369 |
ctatgct |
375 |
Q |
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|||||| |
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| T |
27671349 |
ttatgct |
27671355 |
T |
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