View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_high_9 (Length: 324)
Name: NF0279_high_9
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 27330314 - 27330167
Alignment:
| Q |
153 |
aaaaacaattatcatgaataagttaaattaacnnnnnnnagatgaatagatagggtgtttggagttcgaaacaactcctacatata--atccccaccaat |
250 |
Q |
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|||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27330314 |
aaaaacaattatcatgaataagttgaattaacttttttaa-atgaatagatagggtgtttggagttcgaaacaactcctacatatataatccccaccaat |
27330216 |
T |
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| Q |
251 |
taagctatgcattttatatattgaacacatacattttaaaactactttt |
299 |
Q |
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| T |
27330215 |
taagctatgcattttatatattgaacacatacatgttaaaactactttt |
27330167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 27330424 - 27330379
Alignment:
| Q |
43 |
aatatattataagttgtttacaaaattgttcttaatacatgatatg |
88 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27330424 |
aatatattataagttatttacaaaattgttcttaatacatgatatg |
27330379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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