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Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0279_low_1 (Length: 572)
Name: NF0279_low_1
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0279_low_1
Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 80 - 564
Target Start/End: Complemental strand, 32268651 - 32268167
Alignment:
Q
80
tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttga
179
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
32268651
tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaagaagattacaactttga
32268552
T
Q
180
cctctctcacttgttccaaaatgcaatatatcaatagcagcgatcttgtacttatctctcattgtttccccttgttggaagtcctagacctcagttaccc
279
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
T
32268551
cctctctcacttgttccaaaatgcaatatatcaatagcagcgatcttgtacttatctctcattgtttccccttgttggaagtcctagacctcaattaccc
32268452
T
Q
280
cacacaatgctaccacggggccgtagagctttcactttccaaactccgcaagattaatctctcttatcattcctacatcgatgacgaatttattctccac
379
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32268451
cacacaatgctaccacggggccgtagagctttcactttccaaactccgcaagattaatctctcttatcattcctacatcgatgacgaatttattctccac
32268352
T
Q
380
ttgtttgaaagctgtaagctgctcgaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacat
479
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32268351
ttgtttgaaagctgtaagctgctcgaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacat
32268252
T
Q
480
tgaggtctgtatccttttccaatacttttggacgtgtagactggtggagacgccagtcaacttatatcacttcacaattcatctc
564
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32268251
tgaggtctgtatccttttccaatacttttggacgtgtagactggtggagacgccagtcaacttatatcacttcacaattcatctc
32268167
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 80 - 520
Target Start/End: Original strand, 41900434 - 41900874
Alignment:
Q
80
tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttga
179
Q
|||| |||||||||||||||||| |||||||| |||||| || || || |||| ||| || ||||||| | ||||||| |||||||||||||||||||
T
41900434
tctcattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttga
41900533
T
Q
180
cctctctcacttgttccaaaatgcaatatatcaatagcagcgatcttgtacttatctctcattgtttccccttgttggaagtcctagacctcagttaccc
279
Q
||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| || || ||||| |||||
T
41900534
cctctctcacttgttacgaaatgcattatatcaatagcagcgatcttttacttatctctgactgtttccctttgttggaagttctcgatctcagataccc
41900633
T
Q
280
cacacaatgc---taccacggggccgtagagctttcactttccaaactccgcaagattaatctctcttatcattcctacatcgatgacgaatttattctc
376
Q
|||||||||| || | | | | |||||| |||||| |||||||| ||| ||||||||||| ||||| ||| | |||| |||| ||| ||
T
41900634
cacacaatgcaattatgatgagctagaggagcttgcactttttaaactccgtaaggttaatctctctggtcatt--atcat-gttgacaaattaattttc
41900730
T
Q
377
cacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaa
476
Q
|| ||||| ||| |||||| | || |||||||||||| ||||| ||||| |||| | |||||||| |||| ||||| ||| ||||| |||||||||
T
41900731
cagttgttcaaaaattgtaagtttcttgaagaggccatcttgttgacatgttttgatacaacctttgatggtcttgcttctgctctccgccagagaccaa
41900830
T
Q
477
cattgaggtctgtatccttttccaatacttttggacgtgtagac
520
Q
||||||||||| |||| ||||||||||||||||||| |||||||
T
41900831
cattgaggtctttatcattttccaatacttttggacctgtagac
41900874
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 41886552 - 41886661
Alignment:
Q
85
ttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagacttttt-cgaaaaagattacaactttgacctc
183
Q
|||||||||||||||||| ||||||||||| || | || | || |||||||||| |||||||| || ||||| | ||||||||||||||||| |||||
T
41886552
ttttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgc-gagtttttgccaaaaagattacaactttaacctc
41886650
T
Q
184
tctcacttgtt
194
Q
||||| |||||
T
41886651
tctcatttgtt
41886661
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 227 - 501
Target Start/End: Complemental strand, 27923144 - 27922867
Alignment:
Q
227
gtacttatctctcattgtttccccttgttggaagtcctagacctcagttaccccacacaatgctaccacggggccgtagagctttcacttt---ccaaac
323
Q
|||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| |||||||| || || ||||||||||||| || ||||
T
27923144
gtacttatctctcattatttccctttgttggaagtcctcgacctcagttaccctttacactgctaccatggtgctgtagagctttcacatttaaaaaaac
27923045
T
Q
324
tccgcaagattaatctctcttatcattcctacatcgatgacgaatttattctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgcc
423
Q
|||||||| ||||| ||||| ||||||| ||||| ||||| ||| ||||||| ||||| |||| |||||| | ||||||||||| ||||||||||
T
27923044
tccgcaaggttaatttctctggtcattccgacatcaatgacaaatcgcttctccatttgttcaaaagttgtaaggttctcgaagaggctatcatgttgca
27922945
T
Q
424
atgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaa
501
Q
||| ||||||||||||||| ||| |||||||| || || || ||||||||||| ||||||||| |||| ||||||||
T
27922944
ctgttttgacataacctttgatggaattgctaaagctctgcgcgagagaccaaccttgaggtctttatcattttccaa
27922867
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 17642879 - 17642991
Alignment:
Q
84
gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttgacctc
183
Q
||||||||||||||||||| |||||||||||||| ||| | || ||||||||| | |||||| || |||| || | || |||||||||||||||||
T
17642879
gttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctc
17642978
T
Q
184
tctcacttgttcc
196
Q
|||||||||||||
T
17642979
tctcacttgttcc
17642991
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 500
Target Start/End: Original strand, 18314967 - 18315021
Alignment:
Q
446
ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcca
500
Q
||||||||| ||| ||||||||||||||||| ||||||||| ||||| ||||||
T
18314967
ggtattgcttttgctctccgtgagagaccaactttgaggtctttatccatttcca
18315021
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 17635683 - 17635712
Alignment:
Q
167
attacaactttgacctctctcacttgttcc
196
Q
||||||||||||||||||||||||||||||
T
17635683
attacaactttgacctctctcacttgttcc
17635712
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 32152002 - 32151969
Alignment:
Q
162
aaaagattacaactttgacctctctcacttgttc
195
Q
|||| |||||||||||||||||||||||||||||
T
32152002
aaaacattacaactttgacctctctcacttgttc
32151969
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 51113137 - 51113252
Alignment:
Q
80
tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttga
179
Q
|||||||| ||||||||||| || ||||||||| |||| |||||| |||| |||||||||| ||| |||| |||| ||| |||| ||||||||| |||
T
51113137
tctcgtttcccattgaaacttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaactctga
51113236
T
Q
180
cctctctcacttgttc
195
Q
||||||||||||||||
T
51113237
cctctctcacttgttc
51113252
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 51763330 - 51763446
Alignment:
Q
80
tctcgttttccattgaaactcacgtcactcaatctctc-aaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttg
178
Q
|||||||| |||||||||||||| ||||| |||||||| ||||| | | | |||| |||| |||||||| |||||| |||||||||||||||||
T
51763330
tctcgtttcccattgaaactcacatcacttaatctctccaaacagctt-acctttcctacaaatgggttgcgagttttttcacaaaagattacaactttg
51763428
T
Q
179
acctctctcacttgttcc
196
Q
|| |||||||||||||||
T
51763429
acatctctcacttgttcc
51763446
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 514008 - 514061
Alignment:
Q
446
ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcc
499
Q
||||||||| ||| |||||||||||||||||||||| ||| |||||||||||
T
514008
ggtattgcttctgctctccgtgagagaccaacattgacctctatatccttttcc
514061
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 7225101 - 7225218
Alignment:
Q
80
tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttga
179
Q
||||||||||||||||||||||| ||||| ||| |||| || |||| ||||||||| || ||||||||| || |||| |||| |||||||||||||
T
7225101
tctcgttttccattgaaactcacatcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattacaactttga
7225200
T
Q
180
cctctctcacttgttcca
197
Q
|||||||||| |||||||
T
7225201
cctctctcacatgttcca
7225218
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 553871 - 553759
Alignment:
Q
84
gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttgacctc
183
Q
||||||||||||| ||||| |||||| ||||||| | ||| || ||||||| ||| |||||||| |||| || |||| |||||||||||||||||
T
553871
gttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc
553772
T
Q
184
tctcacttgttcc
196
Q
|||||| ||||||
T
553771
tctcacctgttcc
553759
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 1755669 - 1755551
Alignment:
Q
80
tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttga
179
Q
|||||||| ||||||||||| || || | |||||||| ||| || | ||||||||| | |||||||| |||| || ||||||||||||||||||
T
1755669
tctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttga
1755570
T
Q
180
cctctctcacttgttccaa
198
Q
|||||||||| ||||||||
T
1755569
cctctctcacatgttccaa
1755551
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 498
Target Start/End: Complemental strand, 1601214 - 1601177
Alignment:
Q
461
ctccgtgagagaccaacattgaggtctgtatccttttc
498
Q
||||||||||||||||||||||||||| ||||||||||
T
1601214
ctccgtgagagaccaacattgaggtctttatccttttc
1601177
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 3437642 - 3437678
Alignment:
Q
162
aaaagattacaactttgacctctctcacttgttccaa
198
Q
||||||||||||||||||||||||||| |||||||||
T
3437642
aaaagattacaactttgacctctctcagttgttccaa
3437678
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 21833227 - 21833338
Alignment:
Q
90
cattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcga-aaaagattacaactttgacctctctca
188
Q
||||||| ||| |||||||||| |||| |||||| || ||||||| || |||||||| || ||||| | |||| ||||| ||||||||||||||||
T
21833227
cattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgc-gagtttttgcacaaaacattactactttgacctctctca
21833325
T
Q
189
cttgttccaaaat
201
Q
|||||||||||||
T
21833326
cttgttccaaaat
21833338
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 21833652 - 21833689
Alignment:
Q
461
ctccgtgagagaccaacattgaggtctgtatccttttc
498
Q
||||||||||||||||||||||| ||| ||||||||||
T
21833652
ctccgtgagagaccaacattgagttctttatccttttc
21833689
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 53760233 - 53760270
Alignment:
Q
80
tctcgttttccattgaaactcacgtcactcaatctctc
117
Q
|||||||| |||||||||||||| ||||||||||||||
T
53760233
tctcgtttcccattgaaactcacatcactcaatctctc
53760270
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 7308583 - 7308551
Alignment:
Q
164
aagattacaactttgacctctctcacttgttcc
196
Q
||||||||||||||||||| |||||||||||||
T
7308583
aagattacaactttgacctgtctcacttgttcc
7308551
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 10615747 - 10615713
Alignment:
Q
162
aaaagattacaactttgacctctctcacttgttcc
196
Q
|||||||||||||||||||||||||||||||||||
T
10615747
aaaagattacaactttgacctctctcacttgttcc
10615713
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 8913441 - 8913478
Alignment:
Q
161
aaaaagattacaactttgacctctctcacttgttccaa
198
Q
|||||||||||||||||||||||||||| |||||||||
T
8913441
aaaaagattacaactttgacctctctcaattgttccaa
8913478
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 6417126 - 6417092
Alignment:
Q
162
aaaagattacaactttgacctctctcacttgttcc
196
Q
|||||| ||||||||||||||||||||||||||||
T
6417126
aaaagaatacaactttgacctctctcacttgttcc
6417092
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 7555232 - 7555176
Alignment:
Q
162
aaaagattacaactttgacctctctcacttgttccaaaatgcaatatatcaatagca
218
Q
|||| ||||||||||| ||||| |||||||||||||||||| | | |||||||||||
T
7555232
aaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagca
7555176
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 17352724 - 17352685
Alignment:
Q
162
aaaagattacaactttgacctctctcacttgttccaaaat
201
Q
||||||||||||| ||||||||||||| ||||||||||||
T
17352724
aaaagattacaacattgacctctctcatttgttccaaaat
17352685
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 508
Target Start/End: Original strand, 19467792 - 19467838
Alignment:
Q
462
tccgtgagagaccaacattgaggtctgtatccttttccaatactttt
508
Q
|||||||||||||||||||||||||| |||| |||| |||| |||||
T
19467792
tccgtgagagaccaacattgaggtctttatcgttttgcaatgctttt
19467838
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 19467453 - 19467485
Alignment:
Q
162
aaaagattacaactttgacctctctcacttgtt
194
Q
|||| ||||||||||||||||||||||||||||
T
19467453
aaaatattacaactttgacctctctcacttgtt
19467485
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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