View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_low_10 (Length: 390)
Name: NF0279_low_10
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 8542334 - 8542671
Alignment:
| Q |
1 |
acggcataatcaagagggtgtcgattgtaggaagtagtgtttcagctaaccaaccaacacatttagctagatttgatgcttttgagcattttttaaatga |
100 |
Q |
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| T |
8542334 |
acggcataatcaagagggtgtcaattgtaggaagtagtgtttcagctaaccaaccaacacatttagctagatttgatgcttttgagcattttttaaatga |
8542433 |
T |
|
| Q |
101 |
gaaactccaatagatcataaaaatgagattgagaggtatttggatgaagacaacatgaatggagacaataagtttaaactagttgtctggtggaagaagn |
200 |
Q |
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| T |
8542434 |
gaaactccaatagatcataaaaatgagattgagaggtatttggatgaagacaacatgaatggagacaataagtttaaactagttgtctggtggaagaaga |
8542533 |
T |
|
| Q |
201 |
nnnnnnntgctcgagctttctgatagtatcaagaatggctagggatgtgtttgtcactcatgtttcaaaactctactgatgttagagttttagacactct |
300 |
Q |
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| T |
8542534 |
aaaaaaatgctcgagctttctgatagtatcaagaatggctagggatgtgtttgtcactcatgtttcaaaactctactgatgttagagttttagacactct |
8542633 |
T |
|
| Q |
301 |
tagaagttgtttaaatccagaaattgctcaggcatttt |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
8542634 |
tagaagttgtttaaatccagaaattgctcaggcatttt |
8542671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 8543255 - 8543213
Alignment:
| Q |
119 |
aaaaatgagattgagaggtatttggatgaagacaacatgaatg |
161 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8543255 |
aaaaatgagattgagtggtatttggatgaagacaacatgaatg |
8543213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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