View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0279_low_11 (Length: 384)
Name: NF0279_low_11
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_low_11 |
 | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 78 - 372
Target Start/End: Original strand, 26695124 - 26695418
Alignment:
| Q |
78 |
atgaacgcggatggagctcctggtcctgatggcttcgggggacatttctatcaacatttttgggacattgtggcggtcgatgtagtgagttcgggacaag |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26695124 |
atgaacgcggatggagctcctggtcctgatggcttcgggggacatttctatcaatatttttgggacattgtggcggtcgatgtagtgagttcgttacaag |
26695223 |
T |
|
| Q |
178 |
acttcttttacacaggggcgctgattccaaatattaatgccaacattcaggtgctgattcctaaagtccctggggctgcttccatgggggattttcgccc |
277 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26695224 |
atttcttttacacaggggcgctgattccaaatattaatgccaacattctggtgctgattcctaaagtccctggggctgcttccatgggggatttccgccc |
26695323 |
T |
|
| Q |
278 |
aattgcattggccaattttcaatttaaaattgttactaagattttggcagaaagactggctattatttgtatgagaataatttccccgcaacagc |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
26695324 |
aattgcattggccaattttcaatttaaaattattactaagattttggctgacagactggctattatttgcatgagaataatttcccctcaacagc |
26695418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 78 - 372
Target Start/End: Original strand, 26964856 - 26965150
Alignment:
| Q |
78 |
atgaacgcggatggagctcctggtcctgatggcttcgggggacatttctatcaacatttttgggacattgtggcggtcgatgtagtgagttcgggacaag |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26964856 |
atgaacgcggatggagctcctggtcctgatggcttcgggggacatttctatcaatatttttgggacattgtggcggtcgatgtagtgagttcgttacaag |
26964955 |
T |
|
| Q |
178 |
acttcttttacacaggggcgctgattccaaatattaatgccaacattcaggtgctgattcctaaagtccctggggctgcttccatgggggattttcgccc |
277 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26964956 |
atttcttttacacaggggcgctgattccaaatattaatgccaacattctggtgctgattcctaaagtccctggggctgcttccatgggggatttccgccc |
26965055 |
T |
|
| Q |
278 |
aattgcattggccaattttcaatttaaaattgttactaagattttggcagaaagactggctattatttgtatgagaataatttccccgcaacagc |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
26965056 |
aattgcattggccaattttcaatttaaaattattactaagattttggctgacagactggctattatttgcatgagaataatttcccctcaacagc |
26965150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 370
Target Start/End: Original strand, 20851979 - 20852256
Alignment:
| Q |
93 |
gctcctggtcctgatggcttcgggggacatttctatcaacatttttgggacattgtggcggtcgatgtagtgagttcgggacaagacttcttttacacag |
192 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||| | ||| ||||||||||||||||| | || ||||| || | |||| ||||| || |||||||| | |
|
|
| T |
20851979 |
gctccgggtcctgacggctttgggggtcatttttttcagcatttttgggacattgttggtgtggatgttgttggctcggtccaagagtttttttacacgg |
20852078 |
T |
|
| Q |
193 |
gggcgctgattccaaatattaatgccaacattcaggtgctgattcctaaagtccctggggctgcttccatgggggattttcgcccaattgcattggccaa |
292 |
Q |
| |
|
|||| ||||||| ||| ||||||| || ||| |||||| ||||| || ||||| | ||||| ||||||||||| ||| | || ||||| || ||||| |
|
|
| T |
20852079 |
gggctttgattccgaatcttaatgctaatattttggtgcttattccgaaggtcccgagtgctgcctccatgggggactttagacctattgctttagccaa |
20852178 |
T |
|
| Q |
293 |
ttttcaatttaaaattgttactaagattttggcagaaagactggctattatttgtatgagaataatttccccgcaaca |
370 |
Q |
| |
|
|||||||| ||| | |||| || |||||||| || |||||||| | || |||||| |||| ||||| || ||||| |
|
|
| T |
20852179 |
ctttcaattcaaagtcattacaaaaattttggctgacagactggcactgatctgtatgcgaatcatttctcctcaaca |
20852256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 31555165 - 31555104
Alignment:
| Q |
264 |
ggggattttcgcccaattgcattggccaattttcaatttaaaattgttactaagattttggc |
325 |
Q |
| |
|
||||||||||| || ||||| || |||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
31555165 |
ggggattttcgacctattgctttagccaatttccaatttaaaattgtgactaagatattggc |
31555104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 78 - 372
Target Start/End: Complemental strand, 22834263 - 22833968
Alignment:
| Q |
78 |
atgaacgcggatggagctcctggtcctgatggcttcgggggacatttctatcaacatttttgggacattgtggcggtcgatgtagtgagttcgggacaag |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22834263 |
atgaacgcggatggagctcctggtcctgatggcttcgggggccatttctatcaatatttttgggacattgtggcggtcgatgtagtgagttcggtacaag |
22834164 |
T |
|
| Q |
178 |
acttcttttacacaggggcgctgattccaaatattaatgccaacattcaggtgctgattcctaaagtccctg-gggctgcttccatgggggattttcgcc |
276 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
22834163 |
atttcttttacacaggggcgctgattccaaatatttatgccaacattctggtgctgattcctaaagtccctgtgggctgcttccatgggggatttccgcc |
22834064 |
T |
|
| Q |
277 |
caattgcattggccaattttcaatttaaaattgttactaagattttggcagaaagactggctattatttgtatgagaataatttccccgcaacagc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
22834063 |
caattgcattggccaattttcaatttaaaattattactaagattttggctgacagactggctattatttgcatgagaataatttcccctcaacagc |
22833968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 16004249 - 16004176
Alignment:
| Q |
234 |
attcctaaagtccctggggctgcttccatgggggattttcgcccaattgcattggccaattttcaatttaaaat |
307 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| ||||||||| || ||||| || |||||||||||||| ||||| |
|
|
| T |
16004249 |
attcctaaaatccctggggctacttctatggcggattttcgacccattgctttagccaattttcaattcaaaat |
16004176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 16224519 - 16224592
Alignment:
| Q |
252 |
gctgcttccatgggggattttcgcccaattgcattggccaattttcaatttaaaattgttactaagattttggc |
325 |
Q |
| |
|
|||||||| |||||||||||||| || ||| | | || ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
16224519 |
gctgcttcaatgggggattttcgtcctatttctctcgcaaattttcaatttaaaattgttgcgaagattttggc |
16224592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 78 - 350
Target Start/End: Complemental strand, 32134215 - 32133943
Alignment:
| Q |
78 |
atgaacgcggatggagctcctggtcctgatggcttcgggggacatttctatcaacatttttgggacattgtggcggtcgatgtagtgagttcgggacaag |
177 |
Q |
| |
|
||||| || ||||| ||||| || | ||||||||| ||||||||||| ||||| ||||||||||||||||| | ||||||||| || ||||| | |||| |
|
|
| T |
32134215 |
atgaatgcagatggcgctccgggccatgatggctttgggggacatttttatcagcatttttgggacattgttggggtcgatgttgtcagttcagtacaac |
32134116 |
T |
|
| Q |
178 |
acttcttttacacaggggcgctgattccaaatattaatgccaacattcaggtgctgattcctaaagtccctggggctgcttccatgggggattttcgccc |
277 |
Q |
| |
|
| || |||||||| ||| ||||||| ||| | ||||| |||||| |||| || ||||||||||||| || ||||| ||||||||||| ||| | || |
|
|
| T |
32134115 |
aatttttttacacggggcatttgattcctaatctcaatgctaacattttggtgttgcttcctaaagtcccaggtgctgcctccatgggggactttagacc |
32134016 |
T |
|
| Q |
278 |
aattgcattggccaattttcaatttaaaattgttactaagattttggcagaaagactggctattatttgtatg |
350 |
Q |
| |
|
||||| ||||||| ||||| || ||| | ||||||| |||||||| || ||||| ||| ||||||||||| |
|
|
| T |
32134015 |
tattgctctggccaactttcagttcaaagtcattactaaaattttggctgacagacttgctcttatttgtatg |
32133943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 355
Target Start/End: Complemental strand, 22024212 - 22023950
Alignment:
| Q |
93 |
gctcctggtcctgatggcttcgggggacatttctatcaacatttttgggacattgtggcggtcgatgtagtgagttcgggacaagacttcttttacacag |
192 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||| | ||| ||||||||||||||||| | || ||||| || | |||| ||||| || |||||||| | |
|
|
| T |
22024212 |
gctccgggtcctgacggctttgggggtcatttttttcagcatttttgggacattgttggtgtggatgttgttggctcggtccaagagtttttttacacgg |
22024113 |
T |
|
| Q |
193 |
gggcgctgattccaaatattaatgccaacattcaggtgctgattcctaaagtccctggggctgcttccatgggggattttcgcccaattgcattggccaa |
292 |
Q |
| |
|
|||| ||||||| ||| ||||||| || ||| |||||| ||||| || ||||| || ||||| ||||||||||| ||| | || ||||| |||||||| |
|
|
| T |
22024112 |
gggctttgattccgaatcttaatgctaatattttggtgcttattccgaaggtcccgggtgctgcctccatgggggactttagacctattgctttggccaa |
22024013 |
T |
|
| Q |
293 |
ttttcaatttaaaattgttactaagattttggcagaaagactggctattatttgtatgagaat |
355 |
Q |
| |
|
|||||||| ||| | |||| || |||||||| || |||||||| | ||||||||| |||| |
|
|
| T |
22024012 |
ctttcaattcaaagtcattacaaaaattttggctgacagactggcgctgatttgtatgcgaat |
22023950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 44377508 - 44377572
Alignment:
| Q |
261 |
atgggggattttcgcccaattgcattggccaattttcaatttaaaattgttactaagattttggc |
325 |
Q |
| |
|
||||| ||||| || || ||||| || || |||||||||||||||||||| || ||||||||||| |
|
|
| T |
44377508 |
atgggagatttccgacctattgctttagctaattttcaatttaaaattgtgacgaagattttggc |
44377572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 44393088 - 44393152
Alignment:
| Q |
261 |
atgggggattttcgcccaattgcattggccaattttcaatttaaaattgttactaagattttggc |
325 |
Q |
| |
|
||||| ||||| || || ||||| || || |||||||||||||||||||| || ||||||||||| |
|
|
| T |
44393088 |
atgggagatttccgacctattgctttagctaattttcaatttaaaattgtgacgaagattttggc |
44393152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 325
Target Start/End: Complemental strand, 20928 - 20732
Alignment:
| Q |
129 |
caacatttttgggacattgtggcggtcgatgtagtgagttcgggacaagacttcttttacacaggggcgctgattccaaatattaatgccaacattcagg |
228 |
Q |
| |
|
||||||||||||||||||||| || | ||||| |||||||||| || || || |||||||| ||||||||||| || ||||| || | || || || |
|
|
| T |
20928 |
caacatttttgggacattgtgtcgatggatgtggtgagttcggtgcaggaatttttttacacgggggcgctgatcccgaatatgaactctaatcttttgg |
20829 |
T |
|
| Q |
229 |
tgctgattcctaaagtccctggggctgcttccatgggggattttcgcccaattgcattggccaattttcaatttaaaattgttactaagattttggc |
325 |
Q |
| |
|
| ||||||||||| | ||| || |||||||| |||||||| ||| | ||||| || ||||| |||||||||| ||||||||||| || |||||||| |
|
|
| T |
20828 |
ttctgattcctaaggccccaggtgctgcttctatgggggactttaggccaatagctttggcaaattttcaatacaaaattgttacgaaaattttggc |
20732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 201113 - 201040
Alignment:
| Q |
234 |
attcctaaagtccctggggctgcttccatgggggattttcgcccaattgcattggccaattttcaatttaaaat |
307 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| ||||||||| || ||||| || |||||||||||||| ||||| |
|
|
| T |
201113 |
attcctaaaatccctggggctacttctatggcggattttcgacccattgctttagccaattttcaattcaaaat |
201040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 12126 - 12190
Alignment:
| Q |
261 |
atgggggattttcgcccaattgcattggccaattttcaatttaaaattgttactaagattttggc |
325 |
Q |
| |
|
||||| |||||||| || ||||| || || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
12126 |
atgggagattttcgacctattgctttagctaattttcaatttaaaattgtgactaagattttggc |
12190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 12675107 - 12675034
Alignment:
| Q |
234 |
attcctaaagtccctggggctgcttccatgggggattttcgcccaattgcattggccaattttcaatttaaaat |
307 |
Q |
| |
|
||||||||| || ||| ||| |||| |||| |||||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
12675107 |
attcctaaaatcaatggagctacttctatggcggattttcgccctattgctttggccaattttcaattcaaaat |
12675034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 12685199 - 12685123
Alignment:
| Q |
231 |
ctgattcctaaagtccctggggctgcttccatgggggattttcgcccaattgcattggccaattttcaatttaaaat |
307 |
Q |
| |
|
|||||||||||| ||| ||| ||| |||| |||| |||| ||||||| ||||| ||||||||||||| ||| ||||| |
|
|
| T |
12685199 |
ctgattcctaaaatccttggagctacttctatggcggatattcgccctattgctttggccaattttcgattcaaaat |
12685123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 12675242 - 12675190
Alignment:
| Q |
99 |
ggtcctgatggcttcgggggacatttctatcaacatttttgggacattgtggc |
151 |
Q |
| |
|
||||||||||| || ||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
12675242 |
ggtcctgatggttttgggggacatttttatcagcacttttgggacatcgtggc |
12675190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 42064843 - 42064893
Alignment:
| Q |
134 |
tttttgggacattgtggcggtcgatgtagtgagttcgggacaagacttctt |
184 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| ||||| ||||| |
|
|
| T |
42064843 |
tttttgggacattgtggcggtggatgttgtgagttcggttcaagaattctt |
42064893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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