View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0279_low_15 (Length: 349)

Name: NF0279_low_15
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0279_low_15
NF0279_low_15
[»] chr5 (9 HSPs)
chr5 (33-341)||(3376548-3376856)
chr5 (212-341)||(3401612-3401741)
chr5 (108-314)||(3367971-3368174)
chr5 (63-271)||(3371795-3371995)
chr5 (65-144)||(3374010-3374089)
chr5 (63-205)||(3402087-3402225)
chr5 (33-163)||(3378200-3378324)
chr5 (29-88)||(3368176-3368234)
chr5 (280-341)||(3396436-3396497)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 33 - 341
Target Start/End: Complemental strand, 3376856 - 3376548
Alignment:
Q  33 tgaaccaacatttacaatttcgtcttatatttgatgcaagtaccaccaatacacttgatatatattaataacacaatattgaacattccgaacaacaaaa 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3376856 tgaaccaacatttacaatttcgtcttatatttgatgcaagtaccaccaatacacttgatatatattaataacacaatattgaacattccgaacaacaaaa 3376757  T
Q  133 tgcactattctttcttgatactccttcacaagcattcaatcaagaaatgcacaagatcaaaaagaaagagaatttcttggctacctggattctccaactc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3376756 tgcactattctttcttgatactccttcacaagcattcaatcaagaaatgcacaagatcaaaaagaaagagaatttcttggctacctggattctccaactc 3376657  T
Q  233 gaacttagcagcttcgccgatggagctagattttggcttgggaggtatcgccaagcttaaagacccgtctggtctgtactttctagggcgaccccttttc 332  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3376656 gaacttagcagcttcgccaatggagctagattttggcttgggaggtatcgccaagcttaaagacccgtctggtctgtactttctagggcgaccccttttc 3376557  T
Q  333 ttctctgct 341  Q
    |||| ||||    
T  3376556 ttctttgct 3376548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 3401741 - 3401612
Alignment:
Q  212 gctacctggattctccaactcgaacttagcagcttcgccgatggagctagattttggcttgggaggtatcgccaagcttaaagacccgtctggtctgtac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3401741 gctacctggattctccaactcgaacttagcagcttcgccgatggagctagatgttggcttgggaggtatcgccaagcttaaagacccgtctggtctgtac 3401642  T
Q  312 tttctagggcgaccccttttcttctctgct 341  Q
    ||||||||||| ||||||||||||| ||||    
T  3401641 tttctagggcggccccttttcttctttgct 3401612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 314
Target Start/End: Complemental strand, 3368174 - 3367971
Alignment:
Q  108 atattgaacattccgaacaacaaaatgcactattctttcttgatactccttcacaagcat-tcaatcaagaaatgcacaagatcaaaaagaaagagaatt 206  Q
    |||||||||||||| ||||||||| | ||||||||||    ||||||||||||||||||| |||||||||| | | ||| ||||| ||||||||||||||    
T  3368174 atattgaacattccaaacaacaaagtacactattctt----gatactccttcacaagcatctcaatcaagacacgtacatgatcacaaagaaagagaatt 3368079  T
Q  207 tcttggctacctggattctccaactcgaacttagcagcttcgccgatggagctagattttggcttgggaggtatcgccaagcttaaagacccgtctggtc 306  Q
    |||||| |||||| ||||||||||  |   ||  ||||||  |  |||||||||||| ||||||| ||||| ||| || || | ||||||| |||||||     
T  3368078 tcttggttacctgtattctccaacgtgcttttgccagctttactaatggagctagatgttggcttcggaggcatcaccgagttcaaagacctgtctggtt 3367979  T
Q  307 tgtacttt 314  Q
    ||||||||    
T  3367978 tgtacttt 3367971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 271
Target Start/End: Original strand, 3371795 - 3371995
Alignment:
Q  63 ttgatgcaagtaccaccaatacacttgatatatattaataacacaatattgaacattccgaacaacaaaatgcactattctttcttgatactccttcaca 162  Q
    |||||||||||||| |  |||||||||||||||||||||||  || | ||||||||||  ||| ||||||| |||||    || |||||||| || ||||    
T  3371795 ttgatgcaagtaccgctgatacacttgatatatattaataatgcattgttgaacattctaaactacaaaatacacta----tttttgatactactgcaca 3371890  T
Q  163 agcattcaatcaagaaatgcacaagatcaaaaagaaagagaatttcttggctacctggattctccaactcgaacttagcagcttcgccgatggagctaga 262  Q
    | ||||||||||||||| ||||| |||     | ||||||| |||||| | ||||||| ||||||||||| || || |||| || ||| |||||||||||    
T  3371891 accattcaatcaagaaacgcacatgat----gacaaagagagtttcttagttacctggtttctccaactcaaatttggcagatttgccaatggagctaga 3371986  T
Q  263 ttttggctt 271  Q
    | |||||||    
T  3371987 tgttggctt 3371995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 3374089 - 3374010
Alignment:
Q  65 gatgcaagtaccaccaatacacttgatatatattaataacacaatattgaacattccgaacaacaaaatgcactattctt 144  Q
    |||||||||| |||||| |||||| |||||||||||||  |||||||||||||||||||||||||||||  |||||||||    
T  3374089 gatgcaagtatcaccaagacacttcatatatattaatattacaatattgaacattccgaacaacaaaataaactattctt 3374010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 3402225 - 3402087
Alignment:
Q  63 ttgatgcaagtaccaccaatacacttgatatatattaataacacaatattgaacattccgaacaacaaaatgcactattctttcttgatactccttcaca 162  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||||||| | |||||| ||||||||||| |||||    |||| || |||||||||||    
T  3402225 ttgatgcaagtaccaccaata-acttgatatatactaataatacaatattaagcattccaaacaacaaaatacacta----ttctcgacactccttcaca 3402131  T
Q  163 agca-ttcaatcaagaaatgcacaagatcaaaaagaaagagaat 205  Q
    | || ||||| || |||| || || ||||| |||||||||||||    
T  3402130 atcatttcaaccatgaaacgcgcatgatcacaaagaaagagaat 3402087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 3378324 - 3378200
Alignment:
Q  33 tgaaccaacatttacaatttcgtcttatatttgatgcaagtaccaccaatacacttgatatatattaataacacaatattgaacattccgaacaacaaaa 132  Q
    |||||||||||||||| ||   ||||| ||| |||||||||| ||| |||| ||||||||||||||||||| |||||||| ||||||| || ||||||||    
T  3378324 tgaaccaacatttacagttatatcttaaatt-gatgcaagtatcacaaata-acttgatatatattaataatacaatattaaacattctgagcaacaaaa 3378227  T
Q  133 tgcactattctttcttgatactccttcacaa 163  Q
    | |||||||||||    ||||||||||||||    
T  3378226 tacactattcttt----atactccttcacaa 3378200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 3368234 - 3368176
Alignment:
Q  29 aagttgaaccaacatttacaatttcgtcttatatttgatgcaagtaccaccaatacactt 88  Q
    |||||||||||||||||||| ||   |||||| || ||||||||||||||||||||||||    
T  3368234 aagttgaaccaacatttacatttatatcttatgtt-gatgcaagtaccaccaatacactt 3368176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 3396497 - 3396436
Alignment:
Q  280 tcgccaagcttaaagacccgtctggtctgtactttctagggcgaccccttttcttctctgct 341  Q
    |||||||| | |||||  ||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  3396497 tcgccaagttaaaagattcgtctggtccgtactttctggggcgactccttttcttctttgct 3396436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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