View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0279_low_20 (Length: 319)

Name: NF0279_low_20
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0279_low_20
NF0279_low_20
[»] chr6 (13 HSPs)
chr6 (77-252)||(5253717-5253892)
chr6 (79-252)||(5065387-5065560)
chr6 (142-245)||(5177930-5178033)
chr6 (142-245)||(5279755-5279858)
chr6 (142-245)||(5688904-5689007)
chr6 (142-243)||(5242513-5242614)
chr6 (125-244)||(5126613-5126732)
chr6 (142-245)||(5346220-5346323)
chr6 (145-231)||(5100822-5100908)
chr6 (145-231)||(5135923-5136009)
chr6 (142-245)||(5098402-5098505)
chr6 (142-242)||(5427094-5427194)
chr6 (168-230)||(5124470-5124532)
[»] chr7 (1 HSPs)
chr7 (142-252)||(36212922-36213032)
[»] chr4 (4 HSPs)
chr4 (144-246)||(4337092-4337194)
chr4 (142-212)||(4122645-4122715)
chr4 (124-246)||(4132601-4132720)
chr4 (142-209)||(4319303-4319370)
[»] chr3 (4 HSPs)
chr3 (142-244)||(47985394-47985496)
chr3 (142-244)||(48003968-48004070)
chr3 (142-244)||(47994681-47994783)
chr3 (142-244)||(48013253-48013355)
[»] scaffold1476 (1 HSPs)
scaffold1476 (172-231)||(47-106)
[»] chr2 (1 HSPs)
chr2 (172-231)||(22583333-22583392)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 5253892 - 5253717
Alignment:
Q  77 cactactaacaataacattcgtatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaat 176  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253892 cactactaacaataacattcatatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaat 5253793  T
Q  177 gaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgctcctcc 252  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  5253792 gaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactctttgcccctcc 5253717  T

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Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 5065387 - 5065560
Alignment:
Q  79 ctactaacaataacattcgtatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatga 178  Q
    |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||    
T  5065387 ctactaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaattggttcatcatatatgagataaactgttgtcctcttcacaacga 5065486  T
Q  179 aactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgctcctcc 252  Q
    ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  5065487 aaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactactctctgcccctcc 5065560  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 5178033 - 5177930
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5178033 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactc 5177934  T
Q  242 tctg 245  Q
    ||||    
T  5177933 tctg 5177930  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 5279858 - 5279755
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5279858 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactc 5279759  T
Q  242 tctg 245  Q
    ||||    
T  5279758 tctg 5279755  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 5688904 - 5689007
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| |||||||||||| ||  ||||||||||||||| |||||||||||||  ||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5688904 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactc 5689003  T
Q  242 tctg 245  Q
    ||||    
T  5689004 tctg 5689007  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 5242513 - 5242614
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| ||||||||||   ||| |||||||||||||||||||||||||||||  ||| | ||||||||| || |||||||| |||||| ||| |||||    
T  5242513 tcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactactc 5242612  T
Q  242 tc 243  Q
    ||    
T  5242613 tc 5242614  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 5126613 - 5126732
Alignment:
Q  125 tttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttc 224  Q
    ||||| |||| || || ||||||||||||||||| |  ||| ||||||||||||||| ||||| ||||||| |||||| ||| ||||| || |||| |||    
T  5126613 tttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttc 5126712  T
Q  225 aatacttaataatactctct 244  Q
     |||||| ||| ||||||||    
T  5126713 tatacttgatactactctct 5126732  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 5346323 - 5346220
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||||||||||| ||  ||| |||||||||||||||  ||||||| |||| | |||| ||||||||| || |||||||| |||||| |||  ||||    
T  5346323 tcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaactc 5346224  T
Q  242 tctg 245  Q
    ||||    
T  5346223 tctg 5346220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 5100822 - 5100908
Alignment:
Q  145 tatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 231  Q
    |||| |||||||||||  ||| | ||||||||||||||||||||||||||| |||| | ||||||||| || || ||||| ||||||    
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatactt 5100908  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 5135923 - 5136009
Alignment:
Q  145 tatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 231  Q
    |||| |||||||||||  ||| | ||||||||||||||||||||||||||| |||| | ||||||||| || || ||||| ||||||    
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatactt 5136009  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 5098505 - 5098402
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||  ||| | |||||||||||||||||||| |||||| |||  | ||||||||| || |||||||| |||||| ||| ||| |    
T  5098505 tcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggttctatacttgatattaccc 5098406  T
Q  242 tctg 245  Q
    ||||    
T  5098405 tctg 5098402  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 5427194 - 5427094
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| ||||||||||   ||| || |||||| |||||||||||||||||||  ||| | ||||| ||| || |||||||| |||||| ||| |||||    
T  5427194 tcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactactc 5427095  T
Q  242 t 242  Q
    |    
T  5427094 t 5427094  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 5124470 - 5124532
Alignment:
Q  168 cttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatact 230  Q
    |||||||||||| | ||||| |||||||  |||||| ||||||||||| |||||||| |||||    
T  5124470 cttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatact 5124532  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 36212922 - 36213032
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||| ||||||||||  |  ||| |||||||||||||| |||||||||||||| |||||| ||||| |||||  |||||||| |||||| ||| || ||    
T  36212922 tcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatc 36213021  T
Q  242 tctgctcctcc 252  Q
    ||||| |||||    
T  36213022 tctgcccctcc 36213032  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 4337194 - 4337092
Alignment:
Q  144 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctc 243  Q
    |||||||||||||||||| |||||| |||||||  |||||||| |||||||| |||||| ||| |||||||  |||||||| ||| || |||  ||||||    
T  4337194 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctc 4337095  T
Q  244 tgc 246  Q
    |||    
T  4337094 tgc 4337092  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 4122645 - 4122715
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccacttt 212  Q
    |||||||||||||||||||  ||| || ||||||||||||||||  |||||||| |||||| |||||||||    
T  4122645 tcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccacttt 4122715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 246
Target Start/End: Original strand, 4132601 - 4132720
Alignment:
Q  124 ttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggtt 223  Q
    |||||| |||| || || |||||||||||||||||||  ||| || ||||||||||||||||| ||||||   |||||| ||| ||||| |  |||||||    
T  4132601 ttttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaa---caacaatctcgactttgtcaccaggtt 4132697  T
Q  224 caatacttaataatactctctgc 246  Q
    | ||| || ||| ||||||||||    
T  4132698 ccatatttgatactactctctgc 4132720  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 4319303 - 4319370
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccac 209  Q
    |||||||||||||||||||  ||| || ||||||||||||||||| |||||||  |||||| ||||||    
T  4319303 tcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccac 4319370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 47985394 - 47985496
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || ||||| |||||| ||| |||||    
T  47985394 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactc 47985493  T
Q  242 tct 244  Q
    |||    
T  47985494 tct 47985496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 48003968 - 48004070
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || ||||| |||||| ||| |||||    
T  48003968 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactc 48004067  T
Q  242 tct 244  Q
    |||    
T  48004068 tct 48004070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 47994681 - 47994783
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || | ||| |||||| ||| |||||    
T  47994681 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactc 47994780  T
Q  242 tct 244  Q
    |||    
T  47994781 tct 47994783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 48013253 - 48013355
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || | ||| |||||| ||| |||||    
T  48013253 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactc 48013352  T
Q  242 tct 244  Q
    |||    
T  48013353 tct 48013355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 106 - 47
Alignment:
Q  172 acaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 231  Q
    ||||||||| |||||||| ||||| || ||| |||||||||||| |||||||| ||||||    
T  106 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatactt 47  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 22583333 - 22583392
Alignment:
Q  172 acaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 231  Q
    ||||||||| |||||||| ||||| || ||| |||||||||||| |||||||| ||||||    
T  22583333 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatactt 22583392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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