View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_low_27 (Length: 302)
Name: NF0279_low_27
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_low_27 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 34363183 - 34363364
Alignment:
| Q |
56 |
gagagagatgaaaagagatgata----catcatgttagtataagagataaagttgttcaaaaattatcacgataatcatacaaatatca-tttctcgtac |
150 |
Q |
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| T |
34363183 |
gagagagatgaaaagagatgataattacatcatgttagtataagagagaaagttgttctaaaattatcacaatagtcatacaaatatcaatttctcgttc |
34363282 |
T |
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| Q |
151 |
ttgcattaatttagagatgattgatatgatacattatggtggcttagagacttcaatgttcattttcattcatgcaagcaca |
232 |
Q |
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| T |
34363283 |
ttgcattaatttggagatgattgatatgatacattatggtggcttagagacttcaatgttcattttctttcatgcaagcaca |
34363364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 11215 - 11180
Alignment:
| Q |
80 |
atcatgttagtataagagataaagttgttcaaaaat |
115 |
Q |
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| T |
11215 |
atcatgtaagtataagagataaagttgttcaaaaat |
11180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 36637747 - 36637702
Alignment:
| Q |
76 |
atacatcatgttagtataagagataaagttgttcaaaaattatcac |
121 |
Q |
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| T |
36637747 |
atacataatgtgactataagagataaagttattcaaaaattatcac |
36637702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 43186365 - 43186298
Alignment:
| Q |
79 |
catcatgttagtataagagataaagttgttcaaaaattatcac--gataatcatacaaatatcatttc |
144 |
Q |
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| T |
43186365 |
catcatgtgagtatgagagagaaagttgtacaaaaattatcacaaaataattgtacaaatatcatttc |
43186298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 35857566 - 35857525
Alignment:
| Q |
79 |
catcatgttagtataagagataaagttgttcaaaaattatca |
120 |
Q |
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| T |
35857566 |
catcatgtgagtatgagagataaagttgtacaaaaattatca |
35857525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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