View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_low_28 (Length: 293)
Name: NF0279_low_28
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 284
Target Start/End: Complemental strand, 52646399 - 52646153
Alignment:
| Q |
30 |
aaaacattgatgtcaaatgcagtgtcatttgatttttgagtatttttgaaatgtacttagactgtagcaaaaataagagagggctagagataaacacac- |
128 |
Q |
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| T |
52646399 |
aaaacattgatgtcaaatgcagtgtcatttgatttttga----------aatgtacttagactgtagcaaaaataagagagggctagagataaacacaca |
52646310 |
T |
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| Q |
129 |
-gatatgtgtattttgttgttcaaataacttatctgacctagaaaacaataggactacatatctagaagtagtaatttgatggtatgaaggtttttgagc |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646309 |
cgatatgtgtattttgttgttcaaataacttatctgacctagaaaacaataggactacatatctagaagtagtaatttgatggtatgaaggtttttgagc |
52646210 |
T |
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| Q |
228 |
atttccttcaattacgcacacattcaaaagagaaatacatacctgagaaagaattat |
284 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52646209 |
atttccttcaattacgcacacattcaagagagaaatacatacctgagaaagaattat |
52646153 |
T |
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