View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0279_low_3 (Length: 564)

Name: NF0279_low_3
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0279_low_3
NF0279_low_3
[»] chr7 (10 HSPs)
chr7 (234-393)||(36630636-36630795)
chr7 (82-240)||(36632032-36632191)
chr7 (492-554)||(36630484-36630546)
chr7 (256-365)||(26244805-26244914)
chr7 (50-86)||(36632386-36632422)
chr7 (246-283)||(22293137-22293174)
chr7 (243-283)||(19927993-19928033)
chr7 (243-283)||(25443896-25443936)
chr7 (243-283)||(26279684-26279724)
chr7 (243-283)||(40819670-40819710)
[»] chr4 (2 HSPs)
chr4 (243-365)||(26261300-26261422)
chr4 (243-283)||(54260423-54260463)
[»] chr8 (3 HSPs)
chr8 (255-361)||(44718388-44718494)
chr8 (243-283)||(29054861-29054901)
chr8 (247-283)||(34964492-34964528)
[»] chr2 (3 HSPs)
chr2 (243-365)||(13043624-13043746)
chr2 (290-365)||(29081183-29081258)
chr2 (199-238)||(37847333-37847372)
[»] chr6 (4 HSPs)
chr6 (244-357)||(9150014-9150127)
chr6 (182-240)||(10364082-10364139)
chr6 (243-283)||(21112386-21112426)
chr6 (168-240)||(28187990-28188062)
[»] chr1 (1 HSPs)
chr1 (320-362)||(23206048-23206090)
[»] chr5 (3 HSPs)
chr5 (243-283)||(8871542-8871582)
chr5 (193-238)||(12883553-12883598)
chr5 (243-283)||(13854432-13854472)
[»] chr3 (8 HSPs)
chr3 (243-283)||(21869152-21869192)
chr3 (243-283)||(42864568-42864608)
chr3 (243-283)||(959133-959173)
chr3 (243-283)||(25041637-25041677)
chr3 (243-283)||(39580191-39580231)
chr3 (243-283)||(53330429-53330469)
chr3 (243-283)||(53334113-53334153)
chr3 (243-283)||(53337790-53337830)
[»] scaffold0017 (1 HSPs)
scaffold0017 (243-283)||(37790-37830)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 7e-66; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 234 - 393
Target Start/End: Complemental strand, 36630795 - 36630636
Alignment:
Q  234 tgtacaaccgaagaaacataatattagaaagaagagaaacatagtagaatacattggaggtgttgatggaggtcatcaacgatgttgatgttgagattga 333  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36630795 tgtacaaccgaagaaacataacattagaaagaagagaaacatagtagaatacattggaggtgttgatggaggtcatcagcgatgttgatgttgagattga 36630696  T
Q  334 ggcaattgatggtaatggttagaagagggaatggatatcccttggtggcgacaagaaatc 393  Q
     |||||||||||||||||||||||||||||||||||||| || | |||| || |||||||    
T  36630695 agcaattgatggtaatggttagaagagggaatggatatcgctcgttggcaacgagaaatc 36630636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 36632191 - 36632032
Alignment:
Q  82 tccaatggagtccttaaggattccttacttagatcactcgctattaagaactctccgttaaaaaat-ttatattaagtagcgagtaactatataaatatt 180  Q
    |||||||||||||||||||||||||||||| ||||||||| | ||||| || |||| ||||||||  |||||||||||||||||||| |||||||  |||    
T  36632191 tccaatggagtccttaaggattccttacttggatcactcgttgttaaggaccctccattaaaaaaaattatattaagtagcgagtaattatataaggatt 36632092  T
Q  181 atctctttcttgagcaattaacgggttccgcgtttaaaataagtaataaaatatgtacaa 240  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  36632091 atctctctcttaagcaattaacgggtcccgcgtttaaaataagtaataaaatatgtacaa 36632032  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 492 - 554
Target Start/End: Complemental strand, 36630546 - 36630484
Alignment:
Q  492 atgtgaaatatgtaagataaaagcatcagtcttggagtataagttagttttattggagaataa 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  36630546 atgtgaaatatgtaagataaaagcatcagtcttggagtataagttagttctattagagtataa 36630484  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 26244805 - 26244914
Alignment:
Q  256 attagaaagaagagaaacatagtagaatacattggaggtgttgatggaggtcatcaacgatgttgatgttgagattgaggcaattgatggtaatggttag 355  Q
    |||||| |||||||||||| |||||||  |||||||| |||||| || ||  |||   |||| ||||||||||||||||||||| | |||||||||| |     
T  26244805 attagagagaagagaaacaaagtagaactcattggagatgttgaagggggaaatccgtgatgatgatgttgagattgaggcaatcggtggtaatggtcaa 26244904  T
Q  356 aagagggaat 365  Q
    ||||| ||||    
T  26244905 aagagagaat 26244914  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 36632422 - 36632386
Alignment:
Q  50 aagtgaaatcacgtttttatactctcctgctgtccaa 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  36632422 aagtgaaatcacgtttttatactctcctgctgtccaa 36632386  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 22293174 - 22293137
Alignment:
Q  246 gaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  22293174 gaaacatagtattagagagaagagaaacatagtagaat 22293137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 19927993 - 19928033
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  19927993 gaagaaacataacattagagagaagagaaacagagtagaat 19928033  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 25443936 - 25443896
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  25443936 gaagaaacataacattagagagaagagaaacagagtagaat 25443896  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 26279684 - 26279724
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  26279684 gaagaaacataacattagagagaagagaaacagagtagaat 26279724  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 40819670 - 40819710
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  40819670 gaagaaacataacattagagagaagagaaacagagtagaat 40819710  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 243 - 365
Target Start/End: Complemental strand, 26261422 - 26261300
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaatacattggaggtgttgatggaggtcatcaacgatgttgatgttgagattgaggcaattga 342  Q
    |||||||||||  |||||| |||||||||| | || |||| |||  |||||||||||||||||  ||||  ||||  ||||||||||||||||||||||     
T  26261422 gaagaaacatagcattagagagaagagaaagagagcagaacacaccggaggtgttgatggaggcaatcagtgatgcagatgttgagattgaggcaattgg 26261323  T
Q  343 tggtaatggttagaagagggaat 365  Q
    |||||||||||||||||||||||    
T  26261322 tggtaatggttagaagagggaat 26261300  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 54260463 - 54260423
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  54260463 gaagaaacataacattagagagaagagaaacagagtagaat 54260423  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 361
Target Start/End: Original strand, 44718388 - 44718494
Alignment:
Q  255 tattagaaagaagagaaacatagtagaatacattggaggtgttgatggaggtcatcaacgatgttgatgttgagattgaggcaattgatggtaatggtta 354  Q
    ||||||| ||||||||||||||||||||| |  ||||||||||||||||||  ||||  |||| ||||||||||||| ||  |||||||||||| |||||    
T  44718388 tattagagagaagagaaacatagtagaattctctggaggtgttgatggaggcaatcattgatgctgatgttgagattcagttaattgatggtaaaggtta 44718487  T
Q  355 gaagagg 361  Q
    |||||||    
T  44718488 gaagagg 44718494  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 29054901 - 29054861
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  29054901 gaagaaacataacattagagagaagagaaacatagtagaat 29054861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 34964492 - 34964528
Alignment:
Q  247 aaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||| |||||| |||||||||||||||||||||    
T  34964492 aaacataacattagagagaagagaaacatagtagaat 34964528  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 365
Target Start/End: Original strand, 13043624 - 13043746
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaatacattggaggtgttgatggaggtcatcaacgatgttgatgttgagattgaggcaattga 342  Q
    |||||||||||| |||||| ||||||||||||||||||||| | |||||| |||||||||||   || || |||| | |||||||||||| | ||||||     
T  13043624 gaagaaacataacattagagagaagagaaacatagtagaattctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattgg 13043723  T
Q  343 tggtaatggttagaagagggaat 365  Q
    || |||||||||||| |||||||    
T  13043724 tgataatggttagaaaagggaat 13043746  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 29081258 - 29081183
Alignment:
Q  290 gaggtgttgatggaggtcatcaacgatgttgatgttgagattgaggcaattgatggtaatggttagaagagggaat 365  Q
    ||||||||||||||||  ||||| ||||||||||||||||||| | |||| | |||||||||||||||||||||||    
T  29081258 gaggtgttgatggaggcaatcaatgatgttgatgttgagattgggtcaatcggtggtaatggttagaagagggaat 29081183  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 37847333 - 37847372
Alignment:
Q  199 taacgggttccgcgtttaaaataagtaataaaatatgtac 238  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  37847333 taacgggttccacgtttaaaagaagtaataaaatatgtac 37847372  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 9150014 - 9150127
Alignment:
Q  244 aagaaacataatattagaaagaagagaaacatagtagaatacattggaggtgttgatggaggtcatcaacgatgttgatgttgagattgaggcaattgat 343  Q
    ||||||||||  |||||| |||||||||||||||| |||  |   |||||||||||||||||  ||||  |||| |||||||||||||| | |||| | |    
T  9150014 aagaaacatagcattagagagaagagaaacatagtggaactctccggaggtgttgatggaggcaatcagtgatgctgatgttgagattgggtcaatcggt 9150113  T
Q  344 ggtaatggttagaa 357  Q
    |||||||| |||||    
T  9150114 ggtaatggatagaa 9150127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 10364082 - 10364139
Alignment:
Q  182 tctctttcttgagcaattaacgggttccgcgtttaaaataagtaataaaatatgtacaa 240  Q
    |||||||| ||||||| ||| ||||| | ||||||||| ||||||||||||||||||||    
T  10364082 tctctttcatgagcaactaaggggttacacgtttaaaa-aagtaataaaatatgtacaa 10364139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 21112426 - 21112386
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  21112426 gaagaaacataacattagagagaagagaaacagagtagaat 21112386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 28187990 - 28188062
Alignment:
Q  168 ctatataaatattatctctttcttgagcaattaacgggttccgcgtttaaaataagtaataaaatatgtacaa 240  Q
    ||||||||  || |||||| |||||||||| ||||||||  |  | |||||| ||||||||||||||||||||    
T  28187990 ctatataagaatcatctctctcttgagcaactaacgggtctcatgcttaaaagaagtaataaaatatgtacaa 28188062  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 23206048 - 23206090
Alignment:
Q  320 gatgttgagattgaggcaattgatggtaatggttagaagaggg 362  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  23206048 gatgttgagattgaggcaattagtggtaatggttagaagaggg 23206090  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 8871582 - 8871542
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  8871582 gaagaaacataacattagagagaagagaaacatagtagaat 8871542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 12883598 - 12883553
Alignment:
Q  193 agcaattaacgggttccgcgtttaaaataagtaataaaatatgtac 238  Q
    ||||| |||||||| || ||||||||| ||||||||||||||||||    
T  12883598 agcaactaacgggtcccacgtttaaaaaaagtaataaaatatgtac 12883553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 13854432 - 13854472
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  13854432 gaagaaacataacattagagagaagagaaacagagtagaat 13854472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 21869192 - 21869152
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  21869192 gaagaaacataacattagagagaagagaaacatagtagaat 21869152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 42864608 - 42864568
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  42864608 gaagaaacataacattagagagaagagaaacatagtagaat 42864568  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 959173 - 959133
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  959173 gaagaaacataacattagagagaagagaaacagagtagaat 959133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 25041677 - 25041637
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  25041677 gaagaaacataacattagagagaagagaaacagagtagaat 25041637  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 39580231 - 39580191
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  39580231 gaagaaacataacattagagagaagagaaacaaagtagaat 39580191  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 53330429 - 53330469
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  53330429 gaagaaacataacattagagagaagagaaacagagtagaat 53330469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 53334113 - 53334153
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  53334113 gaagaaacataacattagagagaagagaaacagagtagaat 53334153  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 53337790 - 53337830
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  53337790 gaagaaacataacattagagagaagagaaacagagtagaat 53337830  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 37790 - 37830
Alignment:
Q  243 gaagaaacataatattagaaagaagagaaacatagtagaat 283  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  37790 gaagaaacataacattagagagaagagaaacagagtagaat 37830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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