View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_low_30 (Length: 288)
Name: NF0279_low_30
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_low_30 |
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| [»] scaffold0649 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 15814863 - 15814704
Alignment:
| Q |
51 |
gatgtcgaagaatataactctgagctggatagtggttcagatagtgatgaagatggagtgcagaatcccaaatttccaactttcaagatgcctggtagta |
150 |
Q |
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| T |
15814863 |
gatgtggatgaatataactctgagctggataatggttctgatagtgatgaagatggtgtatagaaccccaaattcccaactttcaagatgccatgtagta |
15814764 |
T |
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| Q |
151 |
tgaaaaagtataaatgggaggttggtactttatttatgacaaagattgattttcaacatg |
210 |
Q |
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| T |
15814763 |
tgaaagagtataaatgggaggttggtactttatttatgacaaagattgattttcaacatg |
15814704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 27654057 - 27654156
Alignment:
| Q |
121 |
aatttccaactttcaagatgcctggtagtatgaaaaagtataaatgggaggttggtactttatttatgacaaagattgattttcaacatgctgttcgaac |
220 |
Q |
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| T |
27654057 |
aatttccagtttttaagatgccaaatagtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggttgattttcagcttgctgttagaac |
27654156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 2135 - 2039
Alignment:
| Q |
51 |
gatgtcgaagaatataactctgagctggatagtggttcagatagtgatgaagatggagtgcagaatcccaaatttccaactttcaagatgcctggta |
147 |
Q |
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| T |
2135 |
gatgtggaagaatataactctgagctggatagtggttcagatagtgatgaagatggagtgcagaacctcaaattcccaactttcaagatgcctggta |
2039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 2043 - 1996
Alignment:
| Q |
173 |
tggtactttatttatgacaaagattgattttcaacatgctgttcgaac |
220 |
Q |
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| T |
2043 |
tggtactttatttatgacaaagattgactttcaacatgttgttagaac |
1996 |
T |
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Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 11384932 - 11385099
Alignment:
| Q |
51 |
gatgtcgaagaatataactctga---gctggatagtggttcagatagtgatgaagatggagtgcagaatcccaaatttccaactttcaagatgcctggta |
147 |
Q |
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| T |
11384932 |
gatgtggaagaatataactctgatgagctggatagtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtca |
11385031 |
T |
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| Q |
148 |
gtatgaaaaagtataaatgggaggttggtactttatttatgacaaagattgattttcaacatgctgtt |
215 |
Q |
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| T |
11385032 |
gtatgaaaggctataaatgggaggtaggtactttatttatgacaaaggttgaatttcaagatgctgtt |
11385099 |
T |
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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 215
Target Start/End: Complemental strand, 21794403 - 21794236
Alignment:
| Q |
51 |
gatgtcgaagaatataactctga---gctggatagtggttcagatagtgatgaagatggagtgcagaatcccaaatttccaactttcaagatgcctggta |
147 |
Q |
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| T |
21794403 |
gatgtggaagaatataactctgatgagctggatagtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtca |
21794304 |
T |
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| Q |
148 |
gtatgaaaaagtataaatgggaggttggtactttatttatgacaaagattgattttcaacatgctgtt |
215 |
Q |
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| T |
21794303 |
gtatgaaaggctataaatgggaggtaggtactttatttatgacaaaggttgaatttcaagatgctgtt |
21794236 |
T |
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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 7564923 - 7564817
Alignment:
| Q |
114 |
aatcccaaatttccaactttcaagatgcctggtagtatgaaaaagtataaatgggaggttggtactttatttatgacaaagattgattttcaacatgctg |
213 |
Q |
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| T |
7564923 |
aatccaaaatttccagtttttaagatgccagacagtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggttgattttcagcttgctg |
7564824 |
T |
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| Q |
214 |
ttcgaac |
220 |
Q |
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| T |
7564823 |
ttagaac |
7564817 |
T |
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